Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2948g00011 ATGTTTCTCAAATGTCTGGGCTTCAGCTGTTCCAAGAACACATCTCAGAGAAATTATCCAACAATTATAGAAGAGTTGTGCCATCAAGTTTCTCTCTCCCATCTTACCAAATCAACCAACAACTTTGATCCAAAAAGGGTAGTTGGACGTGATTCATTTTGCAAAGTATATGAAGCTTCTCTCCAACATAGACACGGCTCTCCTTATACAGTCACAATAAAAAGATTTAATGTAAAAGACAATGACATCTTCAAGAATGAAATAGAGTTGCTCTGCCAGCTTCGTCACCCTAATATCGTCTCTCTTGTAGGATTCTGCAACCACAAGAAAGAGAAGATTATTGTGTACGAATACCTTTCCAATGAATCTCTTTATCAACACATACAAAGCGGGAAACTGTCATGGAAGAAAAGGTTGGAGATCTGCATAGGAGCAGCGCGTGGACTGCACTATCTTCACGCTGGAGCAAAGCGCACCATCATTCATCGTAATATCAATCCTAGCAACATTCTTTTGGATGGGAACATGGAGCCAAGGCTTGCAGATTTTGGCCTTAGCGTACAGGGACAGCGTTTTATGTCAAAGCCAAAGCCGATTAAAGTAGATTCTGTTGTTGGTACTTTTGGCTACCTGGCTAAGGAGCATCTCGTGGACCTTACCATCACTGATAAAACTGATGTTTACTCATTTGGTATGGTTCTATTAGAAGTTGTGTGTGGAGGGTCATATGTGAAAAGGGTAACAGAAAGAGAATTTCTGAGGCCTGTTGAAGAGAAACTTCATCCGAATATCGAAGGAAAGATTGCCCCTGAGTGTTGGCAAGTCTTTGTAGAAATCATTCAAGGATGCGTAAAATATGAAGCAGATGAGCGACCAACGATGGGTGAAGTAGAGATGCAACTTGAGCATGCTTTGTTGTTGCAGGAACAAGCAGATACTGCAAATACCAATGTTGAATATACCTTATTGTCCAAAACCATTATTAATTAG 990 0.4051 MFLKCLGFSCSKNTSQRNYPTIIEELCHQVSLSHLTKSTNNFDPKRVVGRDSFCKVYEASLQHRHGSPYTVTIKRFNVKDNDIFKNEIELLCQLRHPNIVSLVGFCNHKKEKIIVYEYLSNESLYQHIQSGKLSWKKRLEICIGAARGLHYLHAGAKRTIIHRNINPSNILLDGNMEPRLADFGLSVQGQRFMSKPKPIKVDSVVGTFGYLAKEHLVDLTITDKTDVYSFGMVLLEVVCGGSYVKRVTEREFLRPVEEKLHPNIEGKIAPECWQVFVEIIQGCVKYEADERPTMGEVEMQLEHALLLQEQADTANTNVEYTLLSKTIIN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2948g00011 329 SUPERFAMILY Protein kinase-like (PK-like) 16 301 IPR011009 -
Vium2948g00011 329 FunFam Receptor-like protein kinase ANXUR2 7 118 - -
Vium2948g00011 329 Pfam Protein tyrosine and serine/threonine kinase 45 301 IPR001245 GO:0004672|GO:0006468
Vium2948g00011 329 Gene3D Phosphorylase Kinase; domain 1 6 118 - -
Vium2948g00011 329 FunFam Receptor-like protein kinase ANXUR2 119 323 - -
Vium2948g00011 329 Gene3D Transferase(Phosphotransferase) domain 1 119 325 - -
Vium2948g00011 329 PANTHER OS07G0166700 PROTEIN 27 308 IPR045272 GO:0004714|GO:0006468
Vium2948g00011 329 ProSiteProfiles Protein kinase domain profile. 42 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2948g00011 Vium-Chr2948 73756 75105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2948g00011 9 312 Receptor kinase-like Gene Family AT3G51550 39.938 1.31e-67 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium2948g00011 PK_Tyr_Ser-Thr 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2948g00011 - - gmx:100812131 463.381