Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2948g00009 ATGGCTGACACAGTGAAGGTGATAGAACAGTGTGAAGTTCGTCCTCCACCAGGTTCTGTTCCTTCAACCTCTATCCCTCTTACTTTCTTCGATCTTCCATGGCTATGTTGTCCACCTCTCAAACGTATCTTCTTCTTTAACTTCCCTTATTCCACCCAACACTTCCTCCAAACTCTCCTTCCAACTCTCAAGAACTCTCTTTCCCTCACTCTCCAACACTTCTTCCCTTTCTCTTCCAACCTTCTCTTCCCTCCAAAGCCAAACCCACCTCACATCCTCTACACACAATCTAATTCTCTCTCCTTCACAGTAGCTGAGTCCTCAGCAGATTTCAACACCTTTGTCTCTGATTCCCCTAAAGATGTCACAGCTTTGCACCCTTTTGTTCCTGTCTTGCCCCCACCACAAACCTTAGAAGATGGCACCTTTTTTATCCCTCTCATGTCCATTCAGGTCACTGTTATGCCCCATTCTGCCTTCGCCATATGCATCACTTTCAGACACGTGGCTGCTGATGGAAAATCTTTTCATCACTTCATGAAATTCTGGGCCTCTGTTTGTAAGTCCAATGGAGACTTGACTTTGGCTTCCCTTGCTATACCATTGCACAATAGGGATATCATTCAAGACCCGAAAGGTCTTAAGCACATTTTCTTGCAGGAACTGTTGAACTTTTTACCAGAGAATGTAGAGTCCAAGGGCGAAATACGTGATGTTCCTACTGACATGGTGCGTCACACGTTTGTCTTGAGTCATGATCATGTTGAGAAACTCAAGAAATGGGTCTCCATTAAATGCAAAAGCCATGATCTAGAACTGCCACACATAACAACCTTTGTGGTGACATGTTCTTTGATTTGGTTTTGTAAGGTGAAATCAGAAGAGATTAAAGTTGGTACTGTACTTTTCAATAATGATGAGTCCTACATCTTGGCCTTTATGGCAGATTGTCGTAATCGTCCTGAATTTTCCATTCCGTTGGAATACTTTGGAAATTGTTTGGTTTGTGGCAATGCTGAAGTCAAGAGGAGCAAGCTTGTTGGAGAAAATGGTATTTTGGAGGCAGCCATTGCTATTGGTAGTGAGGTTAGACATTTGCAACGAGGAACATTTGAAGGGGCTGAAACATTGATGTCTAATTTTACTGAATTTGCAACGTTGGGGAAGCACACGACAATAATTGCAGGGTTTCCAAGTCTTAAAGTGTATGAAACGGACTTCGGGTGGGGAAAGCCCGAGAAGAGTGAAGTGGTTAATGTCGATAATTCTGGATCAATTTCCCTTTCTGACTGTAGAGACAAAGAAGGTCGAATTGAAGTTGGGTTAGCACTTGAAAAGAGTCAAATGAAGAAATTCAGTACCATTCTGGAAGAGCATCTCACAGAAATTAGCGTTCTTGACTGA 1404 0.4274 MADTVKVIEQCEVRPPPGSVPSTSIPLTFFDLPWLCCPPLKRIFFFNFPYSTQHFLQTLLPTLKNSLSLTLQHFFPFSSNLLFPPKPNPPHILYTQSNSLSFTVAESSADFNTFVSDSPKDVTALHPFVPVLPPPQTLEDGTFFIPLMSIQVTVMPHSAFAICITFRHVAADGKSFHHFMKFWASVCKSNGDLTLASLAIPLHNRDIIQDPKGLKHIFLQELLNFLPENVESKGEIRDVPTDMVRHTFVLSHDHVEKLKKWVSIKCKSHDLELPHITTFVVTCSLIWFCKVKSEEIKVGTVLFNNDESYILAFMADCRNRPEFSIPLEYFGNCLVCGNAEVKRSKLVGENGILEAAIAIGSEVRHLQRGTFEGAETLMSNFTEFATLGKHTTIIAGFPSLKVYETDFGWGKPEKSEVVNVDNSGSISLSDCRDKEGRIEVGLALEKSQMKKFSTILEEHLTEISVLD 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2948g00009 467 Gene3D - 239 462 IPR023213 -
Vium2948g00009 467 Gene3D - 4 233 IPR023213 -
Vium2948g00009 467 Pfam Transferase family 18 455 - -
Vium2948g00009 467 PANTHER - 5 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2948g00009 Vium-Chr2948 63747 65522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2948g00009 45 458 Monolignol Biosynthesis Gene Families AT5G48930 21.759 6.15e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2948g00009 - - gmx:100782335 827.394