Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2948g00008 ATGGCCCAGTCCTTCGGTCAGACCGAGATTAACTGGGACAAGCTAGATAAAACTAGGTTCTATGTCGTAGGAGCTGGACTCTTTACAGGTGTCTCGGTGGCACTTTACCCCATTTCGGTTGTGAAAACTAGGCTGCAGGTTGCCACAAAAGATGCCGTAGAGAGAAGTGTGTTTTCTGTTGTAAAAGGACTACTTAAAACAGATGGCGTCCCTGGTCTGTATAGAGGGTTTGGCACAGTTATCACTGGTGCTATTCCTGCCAGAATAATTTTCCTCTCCACTCTAGAGACCACAAAGGTGGCTGCTTTCAGAATGCTTGAACCGTTTCGACTATCTGAAACTACCCAAGCTGCCATTGCAAATGGAGTTGCAGGCATGACATCATCGATTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCCCAGTACAGCGGGGGTTTGGATGTTGCTCGCAAGGTTTTAAGATCTGATGGCATACGGGGATTGTATAGAGGGTTTGGTCTGTCTGTTATGACTTATTCACCTTCTAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGGGTCATTTGGAGGTTCCTGGGTCATGATACCAAATATGATGAACACACTCCTAGTCTGCAGAAAATAATGTTGGTTCAGGCTATGGGAGGGATTATTGCTGGTGCATCTTCATCCTGCATAACAACCCCATTGGATACTATCAAGACACGATTACAGGTAATGGGTCATGAAAACAAAACCTCTATAAAACAAGTTGCTAAAGATTTAATCAACGAAGATGGTTGGAAAGGCTTTTATAGAGGGTTTGGCCCAAGATTCTTTAGCATGTCAGCGTGGGGCACTTCAATGATATTGACTTATGAGTATCTGAAACGCGTATGCGCAAAAGATGAATAG 945 0.4423 MAQSFGQTEINWDKLDKTRFYVVGAGLFTGVSVALYPISVVKTRLQVATKDAVERSVFSVVKGLLKTDGVPGLYRGFGTVITGAIPARIIFLSTLETTKVAAFRMLEPFRLSETTQAAIANGVAGMTSSIFAQSVFVPIDVVSQKLMVQGYSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVMTYSPSSAVWWASYGSSQRVIWRFLGHDTKYDEHTPSLQKIMLVQAMGGIIAGASSSCITTPLDTIKTRLQVMGHENKTSIKQVAKDLINEDGWKGFYRGFGPRFFSMSAWGTSMILTYEYLKRVCAKDE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2948g00008 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 313 - -
Vium2948g00008 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Vium2948g00008 314 Pfam Mitochondrial carrier protein 119 205 IPR018108 -
Vium2948g00008 314 Pfam Mitochondrial carrier protein 227 313 IPR018108 -
Vium2948g00008 314 Pfam Mitochondrial carrier protein 27 100 IPR018108 -
Vium2948g00008 314 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Vium2948g00008 314 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Vium2948g00008 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Vium2948g00008 314 FunFam Mitochondrial substrate carrier family protein 21 313 - -
Vium2948g00008 314 Coils Coil 312 314 - -
Vium2948g00008 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Vium2948g00008 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Vium2948g00008 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Vium2948g00008 314 Gene3D Mitochondrial carrier domain 22 314 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2948g00008 Vium-Chr2948 57451 62534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2948g00008 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 76.547 1.90e-175 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2948g00008 K15121 - gmx:100782750 584.334