Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2948g00007 ATGGCCTTCTCTCTGCTACCAAAATTAACTCCTTGCATTTTTTTCTTGGTTCTGTTATCTTCAACTTGCTTCACTTCAACAGATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATGTTATGTCCTGGACCCCTGATGGATATGTCGCTGTTGTTACAATGAACAACTTCCAAAGATATCGTCATATTACTTTACCTGGCTGGTATCTAAGGTGGACATGGGCAAAAAAAGAGGTAATATGGACCATGATGGGAGGGCAGACCACTGAACAAGGAGATTGTTCAAAATTTAAGGGAGGTGTTCCACATTCTTGTATGAAAAATCCAACAGTTGTAGATTTGCTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGTTGCAAAGGTGGGGTGCTTAGTTCATGGGTGCAGGATCCAAGCAGAGCAGCAGCATCTTTTCAACTTAGTGTTGGTAGAGCTGGAACCACAAACAGAACTGTTAAACTCCCAACAAACTTCACCTTGGAAGCACCTGGACCACGTTATACTTGTGGACAAGCTAAGATTGTCAGACCCACTAAATTCATTACTCCAGACAAAAGGAGAGTGACCCAAGCACTGATGACATGGCAGGTGGTATGCAGATACTCACAATTTCTAACTCATAAAACTCCCACTTGCTGCCTCTCACTTTCATCTTTCCATAATAATACTATTGTGCCTTGTCCAACATGTTCATGTGGCTGCCGAAGTAACTCATCTCAGTCAGGGAAATGTGTAAATCCAGGTACACCACATTTGGCCTCATTTGTATCTGGCTTCGGGAAGAACGAATTTTCACCTACGGTTCAATGTACCAATCACATGTGTCCAATCAGAGTCAACTGGCATGTTAAGCTTAACTCCGAGAAGTACTGGCATGTGAAGATTACTATTACTAATTTGAATTACAGGATGAATTATTCTGACTGGAACTTAGCCATTCAACACCCAAACTTTAACCATCGGACTCAAGTGTCCGGTTTCACCTACAAGCTAATGACTCCTTATGCTTCAATAAATGATGCAGCAATGTTGTGGGGAATGAAGTCCCAGCATAATGATGTTCTCATCCAAGCTGGCCCGAATGGGAAGGTTGAAGGAGATGTAGTCTTCCGAAAGGATAAAGCAACTTTAAGGTTTGATAAGGGATGGGCTTTCCCTCGAAGGATCTACTTCAATGGTGACACTTGTATTATGCCACCACCCAGTGCTTACCCCTTTTAG 1263 0.422 MAFSLLPKLTPCIFFLVLLSSTCFTSTDAYDPLDPNGNITIKWDVMSWTPDGYVAVVTMNNFQRYRHITLPGWYLRWTWAKKEVIWTMMGGQTTEQGDCSKFKGGVPHSCMKNPTVVDLLPGTPYNQQIANCCKGGVLSSWVQDPSRAAASFQLSVGRAGTTNRTVKLPTNFTLEAPGPRYTCGQAKIVRPTKFITPDKRRVTQALMTWQVVCRYSQFLTHKTPTCCLSLSSFHNNTIVPCPTCSCGCRSNSSQSGKCVNPGTPHLASFVSGFGKNEFSPTVQCTNHMCPIRVNWHVKLNSEKYWHVKITITNLNYRMNYSDWNLAIQHPNFNHRTQVSGFTYKLMTPYASINDAAMLWGMKSQHNDVLIQAGPNGKVEGDVVFRKDKATLRFDKGWAFPRRIYFNGDTCIMPPPSAYPF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2948g00007 420 PIRSF COBRA 2 420 IPR006918 GO:0010215|GO:0016020
Vium2948g00007 420 PANTHER PROTEIN COBRA 17 420 IPR006918 GO:0010215|GO:0016020
Vium2948g00007 420 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2948g00007 Vium-Chr2948 51631 55097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2948g00007 4 420 COBRA Gene Family AT3G02210 65.311 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2948g00007 - - gmx:100783820 726.857