Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2948g00005 ATGGCCTTCTCTCTGCTACCAAAATTAACTCCTTGCATTTTTTTCTTGGTTCTGTTATCTTCAACTTGCTTCACTTCAACAGATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGTTGGACCCCTGATGGATATGTAGCTGTTGTTACAATGAACAATTTCCAACAATATCGTCATATTGCTTCACCTGGCTGGTCCCTAGGATGGACATGGGCAAAAAAGGAGGTAATATGGAGCATGATGGGAGCGCAGACCACTGAACAAGGAGATTGTTCAAAATTTAAGGGAGGTATTCCACATTGCTGTAAGAAGGATCCGACCGTTGTGGATTTGCTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGCTGCAAAGGTGGGGTACTCAGTTCTTGGGTGCAGGATCCTACCAATGCAGTTTCATCATTTCAAGTTAGTGTTGGTAGAGCTGGTACCACAAACAAAACTGTCAAAGTCCCGAAAAACTTTACCCTGCATGCACCAGGACCAGGTTATACTTGTGGTCCAGCCAAGATTGTGAGACCCACCCAATTCATTCAAGCAGACAAAAGGAGAGTGACCCAAGCACTGATGACATGGAATGTGACATGCACATACTCACAATTTCTAGCTCAGAAAACTCCCTCTTGCTGTGTCTCACTTTCATCTTTCTATAATGATACTATTGTGCCGTGCCCAACATGTGCATGTGGTTGCCAGGGTAATTCATCTCAGTCAGGAAGCTGTGTGAATCCAAATACCCCACATTTGGCATCGGTTGTTTCTGGCTCTGGGAAGAATAACTTTTCACCTTTGGTTCAGTGTACCAGTCATATGTGTCCAGTCCGAATCCACTGGCATGTTAAGCTAAACTACAAGGAGTACTGGCGTGTAAAAGTTACTATTACTAATTTTAATTACAGGATGAACTATTCTGAGTGGAACATGGTTGTTCAACATCCAAACTTTGACAATTTGACTCAACTATTCAGTTTCAACTACAAGTCATTGACCCCTTACGGTACAATAAATGATACAGCAATGCTATGGGGAGTTAAGTTCTATAATGATTTTCTCAACCAAGCTGGCCCTAATGGCAATGTTCAATCCGAGCTACTCTTCCGAAAGGATAAAGCAACTTTTACTTTTGATAAGGGATGGGCTTTTCCTCGAAGGATCTACTTCAACGGTGACAACTGTGTCATGCCACCACCTGATGCTTATCCGTGGTTACCTAATGCTGGTTCTCGGCAAGAGGTTTCCTTGTTTGCCTTAGTGATAGCTTCTTTGGTAGCCTTGGTGTTTTATGCCCACGCATAA 1347 0.4239 MAFSLLPKLTPCIFFLVLLSSTCFTSTDAYDPLDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIASPGWSLGWTWAKKEVIWSMMGAQTTEQGDCSKFKGGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWVQDPTNAVSSFQVSVGRAGTTNKTVKVPKNFTLHAPGPGYTCGPAKIVRPTQFIQADKRRVTQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVPCPTCACGCQGNSSQSGSCVNPNTPHLASVVSGSGKNNFSPLVQCTSHMCPVRIHWHVKLNYKEYWRVKVTITNFNYRMNYSEWNMVVQHPNFDNLTQLFSFNYKSLTPYGTINDTAMLWGVKFYNDFLNQAGPNGNVQSELLFRKDKATFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSRQEVSLFALVIASLVALVFYAHA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2948g00005 448 PIRSF COBRA 2 448 IPR006918 GO:0010215|GO:0016020
Vium2948g00005 448 PANTHER PROTEIN COBRA 17 437 IPR006918 GO:0010215|GO:0016020
Vium2948g00005 448 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2948g00005 Vium-Chr2948 39097 55068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2948g00005 4 443 COBRA Gene Family AT3G02210 74.887 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2948g00005 - - gmx:100783820 899.812