Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2948g00004 ATGAGGCTTGTCATATCAGCTGCATGTGTTCTAGTGCTATTCTCTTGTTCAGCTGCGTATGATCCTTTGGATCCAAATGGAAACGTAACGATCAAATGGGATGTTGTGTCTTGGACACCAGATGGCTATGTAGCAGTGGTAACAATGAGCAATTTCCAAATGTTTCGGCACATCATGAATCCGGGATGGACCTTGTCGTGGACGTGGGCAAAGAAGGAAGTAATATGGTCCATGGTAGGAGCTCAAACAACAGAGCAAGGAGACTGCTCTAAGTTCAAAGGCAATGTACCTCACTGCTGCAAGAAAACTCCCACAGTTGTAGACTTGCTCCCTGGTGTACCTTACAATCAACAATTCTCAAACTGTTGTAAGGGTGGAGTGGTGGCAGCATGGGGCCAAGACCCTTCAGCAGCAGTTTCATCCTTCCAAGTCAGTATTGGGTTAGCCGGCACTTCAAACAAGACTGTTAAACTTCCCAAGAACTTCACTCTCTTGGGTCCAGGACCAGGCTACACTTGTGGTCCTGCCAAGGTTGTTCCTTCCACCGTTTTCCTTACACCTGACAAGCGCCGCAAGACTCAAGCACTGATGACATGGAATGTTACTTGCACATACTCACAATTTCTGGCAAGAAAGAACCCAGGTTGCTGTGTATCTTTGTCATCCTTTTACAACGAGACCATTACCCCTTGTCCCTCTTGTGCATGTGGATGCCAGAACAGGAGGAACTGTGTCAAGAGTGACTCTAAACGTATCAACATGGTGGGGATTCACACTCCAAAGAAAGACAATGAACCATTGCTACAGTGCACTCATCATATGTGCCCAATAAGAGTACACTGGCACGTGAAGCTCAACTACAAGGACTATTGGAGAGTCAAGGTTGCCGTAACAAATTTCAACTACAGGATGAACTACTCCCTCTGGACTCTTGCTGTTCAGCATCCAAATCTTAACAATGTCACCCAAGTTTTCAGCTTTGATTACAAGCCTCTACTTCCATACGAGTCCATAAATGATACTGGTATGTTCTATGGAATGAAATACTTTAACGATCTATTGATGGAAGCTGGACCGACTGGGAATGTTCAATCAGAAATTCTTCTTCAGAAAGATAAGGATACATTCACTCTCAAGCAGGGGTGGGCATTTCCTCGCAAGGTCTACTTTAATGGCGAAGAGTGCATGCTGCCACCGCCAGATACCTACCCGATCCTTCCTAACTCTGCCCCTTTGAACCTATTGAACTTCCCAAAATTCATATTCACAATGCTTGTCATGCTAGCTGTTTTGTGA 1296 0.4514 MRLVISAACVLVLFSCSAAYDPLDPNGNVTIKWDVVSWTPDGYVAVVTMSNFQMFRHIMNPGWTLSWTWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSAAVSSFQVSIGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDKRRKTQALMTWNVTCTYSQFLARKNPGCCVSLSSFYNETITPCPSCACGCQNRRNCVKSDSKRINMVGIHTPKKDNEPLLQCTHHMCPIRVHWHVKLNYKDYWRVKVAVTNFNYRMNYSLWTLAVQHPNLNNVTQVFSFDYKPLLPYESINDTGMFYGMKYFNDLLMEAGPTGNVQSEILLQKDKDTFTLKQGWAFPRKVYFNGEECMLPPPDTYPILPNSAPLNLLNFPKFIFTMLVMLAVL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2948g00004 431 PANTHER PROTEIN COBRA 8 424 IPR006918 GO:0010215|GO:0016020
Vium2948g00004 431 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vium2948g00004 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0016020
Vium2948g00004 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2948g00004 Vium-Chr2948 36684 39107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2948g00004 1 431 COBRA Gene Family AT3G29810 63.409 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2948g00004 - - gmx:100784352 887.1