Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2947g00013 ATGGGTACGTTGAATCTACTCTTGTTCTTCTCTTTGGTGAGTCTGTGTGCTATGGCTGCTGCAAAGGTGGTGCTTATTGGGAACAATATTACTGTGTCCTTCGATGATATTGAAGCTAATTTTGCTCCAACAGTCAAAGGTTCTGGAGAGTATGGGGTCTTATATTTGGCAGAGCCACTTGATGCGTGTACAGACCTGACAAATAAAGTTGAACGACTTCCCAATGTGAGTTCACCTTTTACTTTGGTCGTTAGAGGGGGATGTAGCTTTGAGGAGAAAGTCAGAAGGGCACAAAAGGCTGGCTTCCAAGCTGTAATTGTCTATGATAATGAAGAAGACGGTGTCTTGGTTGCAATGGCAGGAAATTCTGCTGGGATAAGAATACATGCAGTATTTGTATCTAAAGCTTCGGGTGAAATACTAAAGAAATATGCTGGGTGGCCTAATGTGGAAATATGGTTAATTCCAACTTTTGAAAACTCGGCATGGTCTATCATGGCAATTTCATTTATCTCCCTACTCGCAATGTCTGCAGTGCTGGCCACTTGTTTCTTTGTCCGCAGACATCGCATAAGAAGAGAAAGGCCTCGGGGTTCTCTTGTCCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGACAACTGTACATCAAGGACATGTGCTATATGCCTTGAAGACTATTGTGTTGGCGAGAAGATCAGGATTCTTCCGTGCTGTCACAAGTTTCATGCTGCATGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAACTGGCTTAACTGATCCACCTCCTTCAGAATCCACACCCTTGCTCTCATCAAGCCCAGCATCTATGGCATCCTCTGTCTTATCTTCTGTGAGATCATCACTAGCTTCATCTTCAGCAATACAAATTGCCCGGACAGCTTCACAGACCACATCTGTTTCCCGTAACCACTCTATTGCCAGTACACCTTATGTTCATCCATCAACATCACTTAGGTCATCCTACCATCAATCCCCCTCCCTAAGCATGAGCCGAAGCTCAGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCACATTCCATGGGATATCCTTCTATGCCATCCCTTAACTCAAGGTACATGTCCCCGTATATTCCAAGTCCAAGCAATGCTTCAGTGAGTTATTTGGGTTCATCCAGTCATCAACAACATCCTCTCCGTTATAGTGAGTCGGCTGCAAGCTTCTCACCATTTGCATCGACACACTCCCTTCCGGAATGTTAA 1338 0.441 MGTLNLLLFFSLVSLCAMAAAKVVLIGNNITVSFDDIEANFAPTVKGSGEYGVLYLAEPLDACTDLTNKVERLPNVSSPFTLVVRGGCSFEEKVRRAQKAGFQAVIVYDNEEDGVLVAMAGNSAGIRIHAVFVSKASGEILKKYAGWPNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRGSLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKIRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSPASMASSVLSSVRSSLASSSAIQIARTASQTTSVSRNHSIASTPYVHPSTSLRSSYHQSPSLSMSRSSVDLRNASQRSLASHLNSPHSMGYPSMPSLNSRYMSPYIPSPSNASVSYLGSSSHQQHPLRYSESAASFSPFASTHSLPEC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2947g00013 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 280 IPR013083 -
Vium2947g00013 445 ProSiteProfiles Zinc finger RING-type profile. 233 275 IPR001841 -
Vium2947g00013 445 CDD PA_C_RZF_like 19 162 IPR044744 -
Vium2947g00013 445 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 193 280 - -
Vium2947g00013 445 Pfam Ring finger domain 232 275 IPR001841 -
Vium2947g00013 445 SUPERFAMILY RING/U-box 223 286 - -
Vium2947g00013 445 SMART ring_2 233 274 IPR001841 -
Vium2947g00013 445 MobiDBLite consensus disorder prediction 409 445 - -
Vium2947g00013 445 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 157 290 - -
Vium2947g00013 445 SUPERFAMILY PA domain 76 163 IPR046450 -
Vium2947g00013 445 Pfam PA domain 80 141 IPR003137 -
Vium2947g00013 445 MobiDBLite consensus disorder prediction 342 388 - -
Vium2947g00013 445 Gene3D - 18 154 - -
Vium2947g00013 445 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 21 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2947g00013 Vium-Chr2947 110912 115859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2947g00013 20 444 C3H Transcription Factor Family AT1G22670 48.260 1.43e-120 356