Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium2947g00012 | ATGGCAATTTCATTTATCTCCCTACTCGCAATGTCTGCAGTGCTGGCCACTTGTTTCTTTGTCCGCAGACATCGCATAAGAAGAGAAAGGCCTCGGGGTTCTCTTGTCCGTGAATTTCATGGTATGAGTAGCCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGACAACTGTACATCAAGGACATGTGCTATATGCCTTGAAGACTATTGTGTTGGCGAGAAGATCAGGATTCTTCCGTGCTGTCACAAGTTTCATGCTGCATGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAACTGGCTTAACTGATCCACCTCCTTCAGAATCCACACCCTTGCTCTCATCAAGCCCAGCATCTATGGCATCCTCTGTCTTATCTTCTGTGAGATCATCACTAGCTTCATCTTCAGCAATACAAATTGCCCGGACAGCTTCACAGACCACATCTGTTTCCCGTAACCACTCTATTGCCAGTACACCTTATGTTCATCCATCAACATCACTTAGGTCATCCTACCATCAATCCCCCTCCCTAAGCATGAGCCGAAGCTCAGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCACATTCCATGGGATATCCTTCTATGCCATCCCTTAACTCAAGGTACATGTCCCCGTATATTCCAAGTCCAAGCAATGCTTCAGTGAGTTATTTGGGTTCATCCAGTCATCAACAACATCCTCTCCGTTATAGTGAGTCGGCTGCAAGCTTCTCACCATTTGCATCGACACACTCCCTTCCGGAATGTTAA | 843 | 0.4543 | MAISFISLLAMSAVLATCFFVRRHRIRRERPRGSLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKIRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSPASMASSVLSSVRSSLASSSAIQIARTASQTTSVSRNHSIASTPYVHPSTSLRSSYHQSPSLSMSRSSVDLRNASQRSLASHLNSPHSMGYPSMPSLNSRYMSPYIPSPSNASVSYLGSSSHQQHPLRYSESAASFSPFASTHSLPEC | 280 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium2947g00012 | 280 | FunFam | Receptor homology region transmembrane domain-and RING domain-containing protein 2 | 28 | 115 | - | - | |
| Vium2947g00012 | 280 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 115 | IPR013083 | - | |
| Vium2947g00012 | 280 | SMART | ring_2 | 68 | 109 | IPR001841 | - | |
| Vium2947g00012 | 280 | Pfam | Ring finger domain | 67 | 110 | IPR001841 | - | |
| Vium2947g00012 | 280 | MobiDBLite | consensus disorder prediction | 244 | 280 | - | - | |
| Vium2947g00012 | 280 | PANTHER | RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED | 1 | 125 | - | - | |
| Vium2947g00012 | 280 | ProSiteProfiles | Zinc finger RING-type profile. | 68 | 110 | IPR001841 | - | |
| Vium2947g00012 | 280 | MobiDBLite | consensus disorder prediction | 177 | 223 | - | - | |
| Vium2947g00012 | 280 | SUPERFAMILY | RING/U-box | 57 | 121 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium2947g00012 | Vium-Chr2947 | 107003 | 110420 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium2947g00012 | 2 | 279 | C3H Transcription Factor Family | AT1G22670 | 45.035 | 4.54e-60 | 194 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium2947g00012 | K15692 | - | gmx:100791248 | 439.884 |