Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2947g00010 ATGCCATCACCAACCCCAAATGGAGACTCCAATCTCCCTCCCAATCACACCCCTCAACAATCCCGTGATATCCCTCCTTTTTTCTCTTCTTCTTATCCCATCACCCTTAAGTTCATGGACGTCGAATACCGCTTGAAGATAGAGGACAAAAAAAAGACCGGAGGGACCATCAAGACCTTCTTCACGCCCTCCGAATCATCGCCATCTCATCAAGGATCAAGCCCAGCCGTGCCGCAGGAGCGAGTTATTTTAAAAGGCGTCACGGGAATAGTACACCCCGGGGAGATCTTAGCGGTACTAGGCCCATCGGGAAGCGGAAAATCGACGCTCCTAAACGCGCTCGCAGGGAGGCTCCATGGGAACGGCCTCGCCGGAACAATCCTGGCCAACTCCAGCAAACTCAACAAATCGGTTCTTCGGAGAACCGGCTTCGTTACACAGGACGACATCCTCTACCCGCATCTCACGGTTCGGGAGACGCTGGTGTTCTGCGCTATGCTGCGCCTCCCTCGCGCGCTTCCGCGCGCGGCGAAGGTTGCGGCGGCGGAGTCGACCATCGCGGAGCTGGGGCTGAGGAAGTGCGAGCACACGATAATAGGAAACAGCTTCATCCGCGGCGTCTCCGGCGGGGAGCGGAAGCGCGTGAGCATCGCGCACGAGATGCTGGTGGACCCCTCGCTGCTGATCCTGGACGAGCCCACCTCCGGTCTGGACTCGACGGCGGCGCACCGCCTCGTGGTGACGCTTGGGTCACTGGCGAAGAAGGGCAAAAGTGTAATCACATCGGTGCACCAACCTTCCAGCCGTGTGTACCAGATGTTCGATAAAGTTGTGTTGCTTTCTGAAGGACAGTGTTTGTACTTCGGCAAAGGAAGCGACGCCATGCGGTACTTTCAGTCGGTTGGTTTCGCGCCGTCATTTCCGATGAATCCGGCGGATTTTCTACTCGATCTCGCAAACGGTGTTAGCCACGTCGATGGTCAAAGTGAAAAAGATAGACCAAACATAAAACAAAACCTAATCCATTCATACAACACAATACTGGGTCCCAAGGTAAAAGCTGCCTGCATGGACACTGCTAGTATTCCTACAAAAAGCACAAATCCTTTGAGAAGCAGCTGTTCGAAAGAATGTAGACGTAGCAACAGGGTTAGCTTCTTTGATTGGTTTTACCAATTCAGTATCCTACTCCAGAGGAGCCTCAAAGAAAGAAAACACGAATCCTTCAACACTCTGAGAGTCTCTCAAGTTATTGCTGCAGCACTATTAGCTGGTTTAATGTGGTGGCATTCAGATTACAGGAACATTCAAGATAGGCTTGGCCTACTCTTCTTCATTTCCATCTTCTGGGGAGTCTTCCCGTCATTTAACTCAGTATTTGCATTCCCTCAAGAACGTGCCATCTTTATGAAAGAGCGAGCTTCTGGCATGTACAAATTGTCCTCCTATTTCATGGCTCGAATTGTTGGAGACCTGCCCATGGAGCTTATCCTTCCCACGATTTTCCTAGTTATTACATATTGGATGGGTGGATTAAAGCCAGATTTTTGGGCTTTTGTGTTGACTTTGTTGGTTGTGCTTGGATACGTGATGGTGTCACAGGGTCTTGGACTTGCTTTAGGTGCAGCAATAATGGATGCGAAACAGGCTTCCACAGTGGCAGCAGTGACAATGCTTGCATTTGTGTTGACCGGTGGATACTATGTCCATCAGGTGCCATCTTGCATGGCTTGGATCAAATATATATCCACAACCTTCTACTGTTATAGGCTGCTGACTAGAATCCAATATGAGGATGGCAAGAAGATATCTTATCTATTAGGCTGCGATCATGGTGATAAGGGTGGCTGCAGGTTTGTTGAAGAGGATGTGGTGGGGCAAATTGGCACTCTGGGCTGCATTGGGGTGCTGCTTTTCATGTTTGTGTTCTACAGATTATTGGCTTACCTTGCATTGAGGCGTATCAAGAGTTGA 1974 0.5015 MPSPTPNGDSNLPPNHTPQQSRDIPPFFSSSYPITLKFMDVEYRLKIEDKKKTGGTIKTFFTPSESSPSHQGSSPAVPQERVILKGVTGIVHPGEILAVLGPSGSGKSTLLNALAGRLHGNGLAGTILANSSKLNKSVLRRTGFVTQDDILYPHLTVRETLVFCAMLRLPRALPRAAKVAAAESTIAELGLRKCEHTIIGNSFIRGVSGGERKRVSIAHEMLVDPSLLILDEPTSGLDSTAAHRLVVTLGSLAKKGKSVITSVHQPSSRVYQMFDKVVLLSEGQCLYFGKGSDAMRYFQSVGFAPSFPMNPADFLLDLANGVSHVDGQSEKDRPNIKQNLIHSYNTILGPKVKAACMDTASIPTKSTNPLRSSCSKECRRSNRVSFFDWFYQFSILLQRSLKERKHESFNTLRVSQVIAAALLAGLMWWHSDYRNIQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFMKERASGMYKLSSYFMARIVGDLPMELILPTIFLVITYWMGGLKPDFWAFVLTLLVVLGYVMVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHQVPSCMAWIKYISTTFYCYRLLTRIQYEDGKKISYLLGCDHGDKGGCRFVEEDVVGQIGTLGCIGVLLFMFVFYRLLAYLALRRIKS 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2947g00010 657 MobiDBLite consensus disorder prediction 1 26 - -
Vium2947g00010 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 300 IPR027417 -
Vium2947g00010 657 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 45 307 IPR003439 GO:0005524
Vium2947g00010 657 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 20 649 - -
Vium2947g00010 657 FunFam ABC transporter G family member 22 72 301 - -
Vium2947g00010 657 Gene3D - 74 301 IPR027417 -
Vium2947g00010 657 Pfam ABC-2 type transporter 391 596 IPR013525 GO:0016020|GO:0140359
Vium2947g00010 657 MobiDBLite consensus disorder prediction 12 26 - -
Vium2947g00010 657 Pfam ABC transporter 84 235 IPR003439 GO:0005524
Vium2947g00010 657 SMART AAA_5 93 284 IPR003593 GO:0016887
Vium2947g00010 657 Pfam ABC-2 type transporter 264 352 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2947g00010 Vium-Chr2947 84104 90768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2947g00010 73 343 Calmodulin-binding Proteins AT2G36910 27.240 2.54e-12 68.6