Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2947g00006 ATGCAGAAGCATGGTTTTTCAGCGAAACGTAGCGTGTTACCGTATCAAACACCGAGACTAAGGGACCACTACGTTCTGGGGAAGAAGCTGGGACAAGGGCAATTTGGAACCACTTACCTTTGCACGCACAAGATGACGGGGAAGCTCTACGCATGCAAATCGATCCCGAAGAGGAAGCTTCTGTGTCAGGAGGATTACGATGATGTGTGGAGGGAGATTCAGATCATGCACCATTTGTCAGAGCATCCCAACGTTGTTCAGATACAAGGGACGTACGAGGATTCTGTGTTCGTGCACCTTGTGATGGAGCTGTGTGCCGGGGGTGAGCTTTTTGACAGGATCATTCAGAAGGGGCATTACAGCGAGAGAGAGGCTGCAAAGTTGATAAAGACCATTGTTGGGGTGGTGGAGGCGTGCCACTCTCTTGGGGTTATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCCCTGGTGAAGATGCCCAGATGAAGGCCACGGATTTTGGCCTCTCTGTCTTCTACAAGCCAGGACAAGCCTTCCATGATGTAGTGGGAAGTCCGTACTATGTTGCCCCTGAGGTGTTGTGCAAGCACTATGGACCAGAAGTGGACGTATGGAGCGCTGGTGTTATCCTATACATCTTACTGAGTGGGGTGCCACCTTTCTGGGCTGAGAGTGAAGCAGGAATTTTCAGACAGATTATAAACGGAGAGCTTGATTTTGTTTCTGAGCCGTGGCCAAATATCTCAGAAAGTGCTAAAGAATTGGTAAAACAGATGTTAGACAGGGACCCTAAGAAAAGAGTTTCTGCTCATGAAGTTTTATGTAACCCTTGGATTGTTGATGATATTGCACCCGACAGACCTCTGGACTCTGCTGTTTTGACACGCCTAAAGCATTTCTCAGCAATGAATAAACTTAAGAAGATGGCATTAAGGGTCATTGCTGAAAGACTTTCAGAGGAAGAAATAGGTGGATTGAAAGAGTTATTTAAAATGATTGACACAGACAACAGTGGGACAATAACTTTTGAGGAACTGAAGGAGGGTTTGAGAAGTGTGGGCTCTAATCTCATGGAATCTGAAATCAAATCCCTTATGGAGGCGGCTGATATAGACAACAGTGGAAGTATAGACTATGGTGAATTTCTTGCTGCTACACTGCACTTGAATAAGATGGAAAGAGAGGAGAATTTGGTTGCTGCTTTTTCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAGCAGGCTACCAAGGATTTTGGCCTTGGCGATGTGCATCTAGATGAGATGATCAAAGAGATTGATCAAGACAATGATGGCAGAATTGATTATTCAGAGTTTGCAGCAATGATGAAAACGGGTGATCCGAATGTTGGTAGAAGCAGAACCATGAAAGGCAATTTGAACTTCAATATTGCAGATGCTTTTGGAATGAAAGACTCTTCCTCTTGA 1476 0.4478 MQKHGFSAKRSVLPYQTPRLRDHYVLGKKLGQGQFGTTYLCTHKMTGKLYACKSIPKRKLLCQEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEREAAKLIKTIVGVVEACHSLGVMHRDLKPENFLFDTPGEDAQMKATDFGLSVFYKPGQAFHDVVGSPYYVAPEVLCKHYGPEVDVWSAGVILYILLSGVPPFWAESEAGIFRQIINGELDFVSEPWPNISESAKELVKQMLDRDPKKRVSAHEVLCNPWIVDDIAPDRPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKEGLRSVGSNLMESEIKSLMEAADIDNSGSIDYGEFLAATLHLNKMEREENLVAAFSYFDKDGSGYITIDELQQATKDFGLGDVHLDEMIKEIDQDNDGRIDYSEFAAMMKTGDPNVGRSRTMKGNLNFNIADAFGMKDSSS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2947g00006 491 CDD STKc_CAMK 23 281 - -
Vium2947g00006 491 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2947g00006 491 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 455 - -
Vium2947g00006 491 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Vium2947g00006 491 SUPERFAMILY EF-hand 320 459 IPR011992 -
Vium2947g00006 491 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Vium2947g00006 491 FunFam CDPK-related kinase 3 16 184 - -
Vium2947g00006 491 Pfam Protein kinase domain 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2947g00006 491 SMART efh_1 400 428 IPR002048 GO:0005509
Vium2947g00006 491 SMART efh_1 328 356 IPR002048 GO:0005509
Vium2947g00006 491 SMART efh_1 364 392 IPR002048 GO:0005509
Vium2947g00006 491 SMART efh_1 434 462 IPR002048 GO:0005509
Vium2947g00006 491 FunFam Calcium-dependent protein kinase 1 289 463 - -
Vium2947g00006 491 FunFam Calcium-dependent protein kinase 1 26 109 - -
Vium2947g00006 491 Gene3D Phosphorylase Kinase; domain 1 25 109 - -
Vium2947g00006 491 ProSiteProfiles EF-hand calcium-binding domain profile. 434 465 IPR002048 GO:0005509
Vium2947g00006 491 Pfam EF-hand domain pair 329 389 IPR002048 GO:0005509
Vium2947g00006 491 Pfam EF-hand domain pair 399 460 IPR002048 GO:0005509
Vium2947g00006 491 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Vium2947g00006 491 FunFam Calcium-dependent protein kinase SK5 192 287 - -
Vium2947g00006 491 CDD EFh 329 388 IPR002048 GO:0005509
Vium2947g00006 491 SUPERFAMILY Protein kinase-like (PK-like) 20 299 IPR011009 -
Vium2947g00006 491 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Vium2947g00006 491 Gene3D - 289 462 - -
Vium2947g00006 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vium2947g00006 491 ProSiteProfiles EF-hand calcium-binding domain profile. 324 359 IPR002048 GO:0005509
Vium2947g00006 491 ProSitePatterns EF-hand calcium-binding domain. 337 349 IPR018247 -
Vium2947g00006 491 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2947g00006 491 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Vium2947g00006 491 Gene3D Transferase(Phosphotransferase) domain 1 110 288 - -
Vium2947g00006 491 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2947g00006 Vium-Chr2947 30505 34528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2947g00006 11 491 EF-hand Containing Proteins AT4G09570 81.950 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium2947g00006 Pkinase 3.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2947g00006 K13412 - gmx:547887 961.444