Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2947g00005 ATGTCGAAAGATTGGAGCGCATCAAAGAGCAAAAATGTTTTGCCGCACGAGACCCCGGACCTATTGGAGCACTACATTGTGGGACAGAAGGTGCTGGGAAAAGGGCGCTTGGCCACCACCTACGTGTGCACCCACAACGAGACAAGGAAGACTTACGCGTGCAAAACCATCCCAAAGACGAAGCTTTTGTGCCAAGAGGAGTACGATGATGTGTGGAGGGAGGTTCAGATCCTGCACCATTTGTCGGAGCACCCCAACGTGGCAAGGATACAGGGAAGCTACGAGGACAAGTTTGCGGTGCACCTTGTGATGGAGCTGTGTCGTGGGGGTGAGCTTTTCTATAGGATCACTCAGAAGGGGTATTTCAGCGAACGAGAGGCTGCCAAGTTGATGAAGACCATTGTTGGGGTGGTGGAAGTGTGCCACGCTCATGGGGTCATTCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCATCGCCACGGATGCCACCCTCAAGGTTATCGATTTTGGTTTCTCTGTCTTCTTTAAACCAGGACAAACCTTTAGTGATATAGTAGGAACTTGCTACTATATGGCCCCAGAGGTGTTGGGCAGACAGTCTGGACCAGAAGTGGACGTTTGGAGTGCTGGTGTTATTCTATACACCTTACTGAGAGGGCTTCCACCTTTCTGGGCAAAATCCGAATCAGGAGTTTTCAAACAGATTTTGCATGCAGAAGTTGATTTTGCATCTCATCCGTGGCCAAGTATATCAGGAAGTGCTAAAGATTTGATAAAGCAGATGTTGGATAAGGACCCCAAGAAAAGAATTTCCGCTCATGAAGTCTTGTGTCACCCTTGGATTGTTGATGACAGTGTTGCCCCGGACAAACCTCTGGATCCTGCTGTTTTGACGCGCCTAAAGCATTTCTCAACAATGAATAAACTTAAGAAGATGGCGATACGTGTCATAGTAGAAAGACTTTCAGAGGAGGAAATAGGTGGATTAAAAGAGATATTTAAAATGATTGACGAAGACAATAGCGGGACAATCACTTTTCAGGAACTCAAAGATGGTTTGAAAAGTGTGGGATGTGATCTCATGGAATCTGAAATTAGATCCCTTATGGATGCGGCTGATATAGACAACAATGGAACAATAGACTATGGTGAATTTCTCGCAGCTACAATGCACTTGAATAAGATGGAAAGAGAAGAGAATTTAGTTGCTGCTTTTTCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAACAGGCTTGTAAAGACTTCGGCCTTGGTGAGTTGCATCTGGATGAGATGATCAAAGAGATTGATCAAGACGATGATGGGAGAATTAATTATGGGGAGTTTGAAACAATGATGAGAAGGGGGGAACCAGGTGGTTGTAGAAGCAAAGTCATGAACAGCAATCATAAAACTTCATTATTTCCTGGTTTAGGAGTGAATGACTCATCCTAA 1482 0.4467 MSKDWSASKSKNVLPHETPDLLEHYIVGQKVLGKGRLATTYVCTHNETRKTYACKTIPKTKLLCQEEYDDVWREVQILHHLSEHPNVARIQGSYEDKFAVHLVMELCRGGELFYRITQKGYFSEREAAKLMKTIVGVVEVCHAHGVIHRDLKPENFLFDTIATDATLKVIDFGFSVFFKPGQTFSDIVGTCYYMAPEVLGRQSGPEVDVWSAGVILYTLLRGLPPFWAKSESGVFKQILHAEVDFASHPWPSISGSAKDLIKQMLDKDPKKRISAHEVLCHPWIVDDSVAPDKPLDPAVLTRLKHFSTMNKLKKMAIRVIVERLSEEEIGGLKEIFKMIDEDNSGTITFQELKDGLKSVGCDLMESEIRSLMDAADIDNNGTIDYGEFLAATMHLNKMEREENLVAAFSYFDKDGSGYITIDELQQACKDFGLGELHLDEMIKEIDQDDDGRINYGEFETMMRRGEPGGCRSKVMNSNHKTSLFPGLGVNDSS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2947g00005 493 CDD EFh 404 463 IPR002048 GO:0005509
Vium2947g00005 493 FunFam Calcium-dependent protein kinase 1 292 466 - -
Vium2947g00005 493 Pfam EF-hand domain pair 332 392 IPR002048 GO:0005509
Vium2947g00005 493 Pfam EF-hand domain pair 402 463 IPR002048 GO:0005509
Vium2947g00005 493 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2947g00005 493 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Vium2947g00005 493 SUPERFAMILY EF-hand 323 463 IPR011992 -
Vium2947g00005 493 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2947g00005 493 Gene3D - 293 465 - -
Vium2947g00005 493 Gene3D Transferase(Phosphotransferase) domain 1 112 292 - -
Vium2947g00005 493 FunFam Calcium-dependent protein kinase 1 28 111 - -
Vium2947g00005 493 SUPERFAMILY Protein kinase-like (PK-like) 14 309 IPR011009 -
Vium2947g00005 493 ProSiteProfiles EF-hand calcium-binding domain profile. 363 398 IPR002048 GO:0005509
Vium2947g00005 493 FunFam Calcium-dependent protein kinase 5 112 292 - -
Vium2947g00005 493 SMART serkin_6 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2947g00005 493 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Vium2947g00005 493 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 458 - -
Vium2947g00005 493 ProSiteProfiles EF-hand calcium-binding domain profile. 435 468 IPR002048 GO:0005509
Vium2947g00005 493 ProSitePatterns EF-hand calcium-binding domain. 376 388 IPR018247 -
Vium2947g00005 493 CDD EFh 332 391 IPR002048 GO:0005509
Vium2947g00005 493 ProSiteProfiles EF-hand calcium-binding domain profile. 327 362 IPR002048 GO:0005509
Vium2947g00005 493 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Vium2947g00005 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vium2947g00005 493 SMART efh_1 403 431 IPR002048 GO:0005509
Vium2947g00005 493 SMART efh_1 331 359 IPR002048 GO:0005509
Vium2947g00005 493 SMART efh_1 367 395 IPR002048 GO:0005509
Vium2947g00005 493 SMART efh_1 437 465 IPR002048 GO:0005509
Vium2947g00005 493 ProSitePatterns EF-hand calcium-binding domain. 340 352 IPR018247 -
Vium2947g00005 493 Gene3D Phosphorylase Kinase; domain 1 27 111 - -
Vium2947g00005 493 CDD STKc_CAMK 24 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2947g00005 Vium-Chr2947 21505 26770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2947g00005 1 493 EF-hand Containing Proteins AT4G09570 68.560 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium2947g00005 Pkinase 1.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2947g00005 K13412 - gmx:100811596 823.157