Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2944g00007 | ATGCCATATAACCCGGATGACCTCATGGTACAATGTGAAGGGTGCAAGGATTGGTATCATCCTGCTTGTGTGGGCATGACCATCGAAGAAGCAAAGAAATTAGATCATTTTGTGTGTTCAGAATGTTCATCTGATGATGATATGAAGAAACCGCAAGCTACATTTTATGCTCGCCAGGAGCCGATGGCAAGGTGGAGCCCAAGCGGCGAAAGAGATGACCATAATGCAGTAGAAACCTTGTTTGGAGGCGTGAGTGACTCTTGCTGA | 267 | 0.4607 | MPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFYARQEPMARWSPSGERDDHNAVETLFGGVSDSC | 88 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2944g00007 | 88 | Pfam | PHD-finger | 5 | 44 | IPR019787 | - | |
Vium2944g00007 | 88 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 59 | IPR013083 | - | |
Vium2944g00007 | 88 | PANTHER | OS08G0421900 PROTEIN | 1 | 58 | - | - | |
Vium2944g00007 | 88 | SMART | PHD_3 | 7 | 43 | IPR001965 | - | |
Vium2944g00007 | 88 | SUPERFAMILY | FYVE/PHD zinc finger | 1 | 47 | IPR011011 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2944g00007 | Vium-Chr2944 | 79934 | 82408 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2944g00007 | 3 | 49 | Alfin-like Transcription Factor Family | AT1G14510 | 31.915 | 1.30e-06 | 42.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Vium2944g00007 | PHD | 1.5e-11 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium2944g00007 | K25868 | - | vum:124832489 | 185.267 |