Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2944g00007 ATGCCATATAACCCGGATGACCTCATGGTACAATGTGAAGGGTGCAAGGATTGGTATCATCCTGCTTGTGTGGGCATGACCATCGAAGAAGCAAAGAAATTAGATCATTTTGTGTGTTCAGAATGTTCATCTGATGATGATATGAAGAAACCGCAAGCTACATTTTATGCTCGCCAGGAGCCGATGGCAAGGTGGAGCCCAAGCGGCGAAAGAGATGACCATAATGCAGTAGAAACCTTGTTTGGAGGCGTGAGTGACTCTTGCTGA 267 0.4607 MPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFYARQEPMARWSPSGERDDHNAVETLFGGVSDSC 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2944g00007 88 Pfam PHD-finger 5 44 IPR019787 -
Vium2944g00007 88 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 59 IPR013083 -
Vium2944g00007 88 PANTHER OS08G0421900 PROTEIN 1 58 - -
Vium2944g00007 88 SMART PHD_3 7 43 IPR001965 -
Vium2944g00007 88 SUPERFAMILY FYVE/PHD zinc finger 1 47 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2944g00007 Vium-Chr2944 79934 82408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2944g00007 3 49 Alfin-like Transcription Factor Family AT1G14510 31.915 1.30e-06 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium2944g00007 PHD 1.5e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2944g00007 K25868 - vum:124832489 185.267