Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2944g00004 ATGGCGAAAACGAGGCCAGGCAGAAAGGACTTGGACTCGTACACCATAAGAGGAACCAACAAGGTCGTACGAGCCGGTGATTGCGTTCTGATGCGGCCATCGGACACGTCGAAGCCCCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAACAACGTGAAGGTGCGTGTGAGGTGGTACTACAGACCCGAAGAGTCCATTGGGGGTCGCAGACAGTTCCATGGTGCCAAAGAGCTTTTTCTCTCCGACCACTATGATGTGCAGAGTGCTCACACCATAGAAGGAAAATGCGTAGTACACTCTTTCAAGAACTACACCAAGCTGGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCCACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAGTGTGAGATGCCATATAACCCGGATGACCTCATGGTACAATGTGAAGGGTGCAAGGATTGGAATTATCAGTTATGTGATCTCACCACCTGCAGAATGAGTGGCCTAAAGGGTGTTAGAAAGTTGTATCATCCTGCTTGTGTGGGCATGACCATCGAAGAAGCAAAGAAATTAGATCATTTTGTGTGTTCAGAATGTTCATCTGATGATGATATGAAGAAACCGCAAGCTACATTTTCTGCATCACCAGGAGCCGATGGCAAGGTGGAGCCCAAGCGGCGAAAGAGATGA 714 0.493 MAKTRPGRKDLDSYTIRGTNKVVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWNYQLCDLTTCRMSGLKGVRKLYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFSASPGADGKVEPKRRKR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2944g00004 237 Gene3D - 2 135 IPR043151 -
Vium2944g00004 237 Pfam BAH domain 23 135 IPR001025 GO:0003682
Vium2944g00004 237 FunFam Chromatin remodeling protein EBS 1 132 - -
Vium2944g00004 237 SMART BAH_4 21 136 IPR001025 GO:0003682
Vium2944g00004 237 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Vium2944g00004 237 MobiDBLite consensus disorder prediction 208 237 - -
Vium2944g00004 237 PANTHER OS08G0421900 PROTEIN 1 228 - -
Vium2944g00004 237 SUPERFAMILY FYVE/PHD zinc finger 183 211 IPR011011 -
Vium2944g00004 237 SUPERFAMILY FYVE/PHD zinc finger 132 168 IPR011011 -
Vium2944g00004 237 CDD BAH_BAHCC1 22 156 - -
Vium2944g00004 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 213 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2944g00004 Vium-Chr2944 67341 71375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2944g00004 31 132 Core DNA Replication Machinery Family AT4G14700 29.126 5.02e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2944g00004 K25868 - gmx:100800993 442.58