Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium2944g00003 | ATGCGGCCATCGGACACGTCGAAGCCCCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAACAACGTGAAGGTGCGTGTGAGGTGGTACTACAGACCCGAAGAGTCCATTGGGGGTCGCAGACAGTTCCATGGTGCCAAAGAGCTTTTTCTCTCCGACCACTATGATGTGCAGAGTGCTCACACCATAGAAGGAAAATGCGTAGTACACTCTTTCAAGAACTACACCAAGCTGGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCCACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAGTGTGAGATGCCATATAACCCGGATGACCTCATGGTACAATGTGAAGGGTGCAAGGATTGGAATTATCAGTTATGTGATCTCACCACCTGCAGAATGAGTGGCCTAAAGGGTGTTAGAAAGTTGTATCATCCTGCTTGTGTGGGCATGACCATCGAAGAAGCAAAGAAATTAGATCATTTTGTGTGTTCAGAATGTTCATCTGATGATGATATGAAGAAACCGCAAGCTACATTTTCTGCATCACCAGGAGCCGATGGCAAGGTGGAGCCCAAGCGGCGAAAGAGATGA | 624 | 0.4872 | MRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWNYQLCDLTTCRMSGLKGVRKLYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFSASPGADGKVEPKRRKR | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium2944g00003 | 207 | SMART | BAH_4 | 1 | 106 | IPR001025 | GO:0003682 | |
| Vium2944g00003 | 207 | ProSiteProfiles | BAH domain profile. | 1 | 106 | IPR001025 | GO:0003682 | |
| Vium2944g00003 | 207 | PANTHER | OS08G0421900 PROTEIN | 1 | 199 | - | - | |
| Vium2944g00003 | 207 | Gene3D | - | 1 | 106 | IPR043151 | - | |
| Vium2944g00003 | 207 | SUPERFAMILY | FYVE/PHD zinc finger | 153 | 181 | IPR011011 | - | |
| Vium2944g00003 | 207 | MobiDBLite | consensus disorder prediction | 178 | 207 | - | - | |
| Vium2944g00003 | 207 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 107 | 183 | IPR013083 | - | |
| Vium2944g00003 | 207 | Pfam | BAH domain | 2 | 105 | IPR001025 | GO:0003682 | |
| Vium2944g00003 | 207 | SUPERFAMILY | FYVE/PHD zinc finger | 102 | 138 | IPR011011 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium2944g00003 | Vium-Chr2944 | 67336 | 71375 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium2944g00003 | 1 | 102 | Core DNA Replication Machinery Family | AT4G14700 | 29.126 | 4.30e-10 | 57.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium2944g00003 | K25868 | - | gmx:100800993 | 384.03 |