LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2943g00016	ATGTTTTCCACCGACCCACAAGCGACCTCGCCGGACTCGGGAGGTTCCCGTCCGGCGCTGTCGGACGAGGAGGTGTTTCTGGCAGCGAGCCACCCCAAGAAACGCGCTGGGAGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTTCCGCGGCGTCAGGCGGAGGGACTCCGGTAAGTGGGTGTGCGAGGTGCGCGAGCCCAACAAGAAGACTAGGATTTGGCTGGGGACCTTTCCTACGGCGGAGATGGCGGCGCGTGCACACGACGTGGCTGCGCTGGCGCTTAGGGGAAGGTCGGCCTGTCTCAACTTCGCCGACTCCGCGAATCGGTTACCGGTGCCGGCGACGGCTGATCCCCGGGACATTCAGAAGGCGGCGGCAGAGGCTGCAGAGGCGTTTCGGCCCGGTAACGAATCGGGAAAGGATGATGATGCGGTGGTGGAGACCGTGGCGACAGCGACGGAGAGTGTTGAAGAAAAAGAGATGGAGGATCTGAGGAACATGGTGCTGATGTCGCCAACCCATTGCTTCGAGAGTGATGAATATGGAAGTACGGAAATGGAATTTGAAGACATTGAAGTTTCGTTGTGGAGTTACTCACTCTAA	606	0.6007	MFSTDPQATSPDSGGSRPALSDEEVFLAASHPKKRAGRKKFRETRHPVFRGVRRRDSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAALALRGRSACLNFADSANRLPVPATADPRDIQKAAAEAAEAFRPGNESGKDDDAVVETVATATESVEEKEMEDLRNMVLMSPTHCFESDEYGSTEMEFEDIEVSLWSYSL	201

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2943g00016	201	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	9	199	IPR045277	GO:0003700
	Vium2943g00016	201	PRINTS	Ethylene responsive element binding protein signature	49	60	IPR001471	GO:0003700\|GO:0006355
	Vium2943g00016	201	PRINTS	Ethylene responsive element binding protein signature	71	87	IPR001471	GO:0003700\|GO:0006355
	Vium2943g00016	201	Gene3D	AP2/ERF domain	48	106	IPR036955	GO:0003700\|GO:0006355
	Vium2943g00016	201	SMART	rav1_2	48	111	IPR001471	GO:0003700\|GO:0006355
	Vium2943g00016	201	MobiDBLite	consensus disorder prediction	1	43	-	-
	Vium2943g00016	201	MobiDBLite	consensus disorder prediction	1	16	-	-
	Vium2943g00016	201	ProSiteProfiles	AP2/ERF domain profile.	48	105	IPR001471	GO:0003700\|GO:0006355
	Vium2943g00016	201	FunFam	Ethylene-responsive transcription factor 2	47	106	-	-
	Vium2943g00016	201	CDD	AP2	49	107	IPR001471	GO:0003700\|GO:0006355
	Vium2943g00016	201	SUPERFAMILY	DNA-binding domain	48	107	IPR016177	GO:0003677
	Vium2943g00016	201	Pfam	AP2 domain	47	97	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2943g00016	Vium-Chr2943	164930	165923	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2943g00016	1	199	AP2-EREBP Transcription Factor Family	AT4G25480	53.704	1.09e-60	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vium2943g00016		AP2	2.4e-15	CL0081