Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2943g00015 ATGGATGGCAACCCTTTTGGAAACGTTCCACCACCACCAATACAAGTCCCTGATAACTTTCCTCACTCATCCTCCTCTTCGCCAACCCCAACCACGTCCTCTCCGTCTCCCACTCCTTCCGCCGGCTTCCGCTACAGGGGGACGCGCTCCCGTAGCGGTAAGTGGGTGTCGGAGATAAGGGAGCCACGTAAAACCACGCGCATTTGGCTGGGGACTTACCCGGCACCGGACATGGCTGCGGCGGCCTATGATGTCGCGGCTCTCGCGTTGAAGGGACCCGACACGCCCCTTAACTTCCCCAATTCCATACTCTCGTACCCGATTCCCGCGTCATTGTCTGCCACCGATATTCAAGCCGCGGCTGCGGCAGCAGCGCAGGCTAGGCTCGTGAGGGCGCCGCAGGAGAGTGGGCAGGCGGTAAACCCTGATATTGGACAGGAGTCGGAGAGGCGTGATGAGTACTATGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTTGATGACATGGCCAGGGGAATGCAGGTTGTGAGACCGTACGGATCAACCTACGCAAGTTGTTCCAGATTACAAGTAATGTTATAA 585 0.5675 MDGNPFGNVPPPPIQVPDNFPHSSSSSPTPTTSSPSPTPSAGFRYRGTRSRSGKWVSEIREPRKTTRIWLGTYPAPDMAAAAYDVAALALKGPDTPLNFPNSILSYPIPASLSATDIQAAAAAAAQARLVRAPQESGQAVNPDIGQESERRDEYYDEDELLNMPNLLDDMARGMQVVRPYGSTYASCSRLQVML 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2943g00015 194 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Vium2943g00015 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 170 - -
Vium2943g00015 194 SMART rav1_2 44 106 IPR001471 GO:0003700|GO:0006355
Vium2943g00015 194 MobiDBLite consensus disorder prediction 19 45 - -
Vium2943g00015 194 PRINTS Ethylene responsive element binding protein signature 82 102 IPR001471 GO:0003700|GO:0006355
Vium2943g00015 194 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vium2943g00015 194 MobiDBLite consensus disorder prediction 1 18 - -
Vium2943g00015 194 Pfam AP2 domain 49 92 IPR001471 GO:0003700|GO:0006355
Vium2943g00015 194 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Vium2943g00015 194 ProSiteProfiles AP2/ERF domain profile. 44 100 IPR001471 GO:0003700|GO:0006355
Vium2943g00015 194 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Vium2943g00015 194 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2943g00015 Vium-Chr2943 150434 152158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2943g00015 45 174 AP2-EREBP Transcription Factor Family AT5G52020 56.643 9.00e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2943g00015 AP2 5.7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2943g00015 - - gmx:100776717 264.233