Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2943g00011 ATGGAAGATGAAAGAGATGCTGAGGCTGCTATTCGTGCTCTTGATCGAATTGAATTTGGTCGTAAGGGACGAAGACTCCGTGTGGAATGGACAAAGCATGAACGTGGTGTTAGAAGGCCATCTAGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCAAAGACCTTGTTTGTAATTAATTTCGATACATACCATACCAGAACAAGGGACTTAGAGAGGCACTTTGAACCGTATGGTAAGATAGTCAGTGTTAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCGGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGTAAGTTACTGGATCGAGTAATTTCAGTTGAATTTGCTGTAAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGCCGTGATCGTCAGCGTGATAGAAGCCGTGATGGAAGAAGATCCCTTAGTCCTTATAGGAGAGAAAGAGGTAGTCCTGATTACGGTCGTGGGCCCAGTCCATATCAGAGAGAGAGGGGAAGTCCTGACTATGGCCGTGACCGAAGCCGTAGCAGAAGCCCCCCTAGAAGGGAGCCAGCTAGCCCTGCATATGGACGTAGAAGCCCCAGTCCATATAGAAGAGAAAGGGAGGGTTCTGATCCTGTTAGGGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGCCATTTCTCCTTCTCATAGTCCTGAAGAAAGAGGGAGAACAAGTCCTCAAAATGGTCGTGGTTCTAGCCATAGTCCTCGTGATACTGAGAAGATTAGCCCTGAAAATGGACATGGCTCTGGAAGTCCCGATGAAAAAGGGAATGCCAGCCCTTACAATGGTTATGGAAGGAGCCCAAATACCGTGCCTGATGCTAGGGACAGTCCTAACTACGGTGGTCCTGAAAGTCCCATGCATGAAAGATATCGCAGCCAGTCTCCCCCTGCGGACGAATGA 987 0.4742 MEDERDAEAAIRALDRIEFGRKGRRLRVEWTKHERGVRRPSSSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSLSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRREPASPAYGRRSPSPYRREREGSDPVRDSSRSPYHKERGRTDHAISPSHSPEERGRTSPQNGRGSSHSPRDTEKISPENGHGSGSPDEKGNASPYNGYGRSPNTVPDARDSPNYGGPESPMHERYRSQSPPADE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2943g00011 328 SUPERFAMILY RNA-binding domain, RBD 39 131 IPR035979 GO:0003676
Vium2943g00011 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 125 IPR000504 GO:0003723
Vium2943g00011 328 FunFam Serine/arginine-rich splicing factor RS31 46 136 - -
Vium2943g00011 328 MobiDBLite consensus disorder prediction 207 244 - -
Vium2943g00011 328 SUPERFAMILY RNA-binding domain, RBD 1 51 IPR035979 GO:0003676
Vium2943g00011 328 MobiDBLite consensus disorder prediction 127 165 - -
Vium2943g00011 328 Gene3D - 40 135 IPR012677 -
Vium2943g00011 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 118 IPR000504 GO:0003723
Vium2943g00011 328 MobiDBLite consensus disorder prediction 178 193 - -
Vium2943g00011 328 MobiDBLite consensus disorder prediction 245 260 - -
Vium2943g00011 328 SMART rrm1_1 55 121 IPR000504 GO:0003723
Vium2943g00011 328 MobiDBLite consensus disorder prediction 127 328 - -
Vium2943g00011 328 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2943g00011 Vium-Chr2943 114109 117277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2943g00011 22 127 Eukaryotic Initiation Factors Gene Family AT3G16380 30.973 1.08e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2943g00011 K12893 - gmx:100796509 533.102