Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2943g00010 ATGAAGCCTATTTTCTGTGGAAACTTTGAATATGATGCCCGGCAGTCAGAGTTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGACAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGATGAAAGAGATGCTGAGGCTGCTATTCGTGCTCTTGATCGAATTGAATTTGGTCGTAAGGGACGAAGACTCCGTGTGGAATGGACAAAGCATGAACGTGGTGTTAGAAGGCCATCTAGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCAAAGACCTTGTTTGTAATTAATTTCGATACATACCATACCAGAACAAGGGACTTAGAGAGGCACTTTGAACCGTATGGTAAGATAGTCAGTGTTAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCGGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGTAAGTTACTGGATCGAGTAATTTCAGTTGAATTTGCTGTAAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGCCGTGATCGTCAGCGTGATAGAAGCCGTGATGGAAGAAGATCCCTTAGTCCTTATAGGAGAGAAAGAGGTAGTCCTGATTACGGTCGTGGGCCCAGTCCATATCAGAGAGAGAGGGGAAGTCCTGACTATGGCCGTGACCGAAGCCGTAGCAGAAGCCCCCCTAGAAGGGAGCCAGCTAGCCCTGCATATGGACGTAGAAGCCCCAGTCCATATAGAAGAGAAAGGGAGGGTTCTGATCCTGTTAGGGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGCCATTTCTCCTTCTCATAGTCCTGAAGAAAGAGGGAGAACAAGTCCTCAAAATGGTCGTGGTTCTAGCCATAGTCCTCGTGATACTGAGAAGATTAGCCCTGAAAATGGACATGGCTCTGGAAGTCCCGATGAAAAAGGGAATGCCAGCCCTTACAATGGTTATGGAAGGAGCCCAAATACCGTGCCTGATGCTAGGGACAGTCCTAACTACGGTGGTCCTGAAAGTCCCATGCATGAAAGATATCGCAGCCAGTCTCCCCCTGCGGACGAATGA 1110 0.4685 MKPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRIEFGRKGRRLRVEWTKHERGVRRPSSSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSLSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRREPASPAYGRRSPSPYRREREGSDPVRDSSRSPYHKERGRTDHAISPSHSPEERGRTSPQNGRGSSHSPRDTEKISPENGHGSGSPDEKGNASPYNGYGRSPNTVPDARDSPNYGGPESPMHERYRSQSPPADE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2943g00010 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Vium2943g00010 369 MobiDBLite consensus disorder prediction 248 285 - -
Vium2943g00010 369 MobiDBLite consensus disorder prediction 219 234 - -
Vium2943g00010 369 SMART rrm1_1 96 162 IPR000504 GO:0003723
Vium2943g00010 369 SMART rrm1_1 3 70 IPR000504 GO:0003723
Vium2943g00010 369 MobiDBLite consensus disorder prediction 168 206 - -
Vium2943g00010 369 Gene3D - 1 85 IPR012677 -
Vium2943g00010 369 Gene3D - 86 176 IPR012677 -
Vium2943g00010 369 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Vium2943g00010 369 MobiDBLite consensus disorder prediction 168 369 - -
Vium2943g00010 369 CDD RRM1_AtRSp31_like 2 73 - -
Vium2943g00010 369 MobiDBLite consensus disorder prediction 286 301 - -
Vium2943g00010 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Vium2943g00010 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Vium2943g00010 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Vium2943g00010 369 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Vium2943g00010 369 SUPERFAMILY RNA-binding domain, RBD 4 168 IPR035979 GO:0003676
Vium2943g00010 369 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2943g00010 Vium-Chr2943 114109 117979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2943g00010 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 25.434 4.33e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2943g00010 K12893 - gmx:100796509 616.305