Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2943g00004 ATGGGCTTTCTCCGTCGAATTTTCGGCGCCAAAAAACCCTCAGACTCCAAACCCCCCAAGAAAAGATGGGCCTTCCTCAAGCCTACAGCCCGGAACAAGTCACTCCCACCGCCACCGCCCCCTTCTGCCTTCAACGCCCACTTTGATTCTTCCAATCCTTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCTACTGCCGCCGTCGCCGAGGCCGCCCTAGCCGCTGCGCACGCCGCAGCAGAGGTTGTCAGACTCACGAGCGGCGCCACCGCCGCCACAAGTACCAGCAACAGCACAAGACCGGCTGCCGCGGCGCGTGTTAGCCAACTGCGGTTGCCGGAGCAGACTGCCGCCGTTAAGATACAATCAGCGTTCCGTGGCTACCTGGCAAGGAGGGCATTGAGAGCACTAAAAGCATTGGTGAAGCTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAAGTGCTGATATGCTGAGGCGCATGCAGACATTGGTGAGACTTCAGGCCCAGGCACGTGCAAGCCGTGCGCACTTGTCATATAATACGCCTTCTTTCAAGTCTTCCCTTTCTCACTACCCTGTCCCTGAACAACATGAACACCCACCTCGTGTCCTGAATACAAAATTTGATGGATCTTCTATCCTTAAGAGATGTAGTTCCAATGCCAACTTTAGGAACGTTGACTCAGAACGACCCCGGTTTGATTCAAATTGGTTAAACCGTTGGATGGAATTAGATAACAAGTGCAGGCAAACTGGAGATGCTTCATTGAAAACTGGACGCCCAGACGATGATAAAAGTGACAAGATTCTCGAAGTAGATACTTGGAGGCCACACTTCAAGTCTCACCACAGTAGCAGCTCCTTTCAGACAGCACATTATTATTTGAGTTCTGACTACAATAATGATAACTTTATGGCACATGAGTCTCCATCAAAACGTTCGGCAAAGACTGTAAACCAAAGTTTCTCATCAAGGGAGGTGTTGCAGCTGAACTCTCTGAAGTTTCAGAAGGGGAAAGAAGAAGCGACTTCAAGAACTGCTGACAATAGTCCACAAGCTTTTTCAGCCAATTCTAGAAATGGAAGTGGTGCAAGGAGGGGTCCCTTTACACCTACCGGGAGTGAGTACTCCTGGGGTTTCTTCAGTGGCTACTCGGGTCACCCCAATTACATGGCAAATACTGAATCTTTTCAAGCCAAGGTTAGATCACAAAGTGCACCAAGACAAAGGCTGGAGTTTGACAGACACAGTTCCACTAGGAGACCTGTTCATGTGGTGGGGCCTAATTCAGACCAGGATTCAGATTTAAGAAACAAAGTCTTACCTGCTTCTAACACTGTCAACAGAATTGGGAGTAGTAATTTAAGGTGA 1386 0.4986 MGFLRRIFGAKKPSDSKPPKKRWAFLKPTARNKSLPPPPPPSAFNAHFDSSNPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGATAATSTSNSTRPAAAARVSQLRLPEQTAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQAQARASRAHLSYNTPSFKSSLSHYPVPEQHEHPPRVLNTKFDGSSILKRCSSNANFRNVDSERPRFDSNWLNRWMELDNKCRQTGDASLKTGRPDDDKSDKILEVDTWRPHFKSHHSSSSFQTAHYYLSSDYNNDNFMAHESPSKRSAKTVNQSFSSREVLQLNSLKFQKGKEEATSRTADNSPQAFSANSRNGSGARRGPFTPTGSEYSWGFFSGYSGHPNYMANTESFQAKVRSQSAPRQRLEFDRHSSTRRPVHVVGPNSDQDSDLRNKVLPASNTVNRIGSSNLR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2943g00004 461 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Vium2943g00004 461 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
Vium2943g00004 461 PANTHER IQ-DOMAIN 5-RELATED 17 431 - -
Vium2943g00004 461 MobiDBLite consensus disorder prediction 412 426 - -
Vium2943g00004 461 Pfam Protein of unknown function (DUF4005) 355 421 IPR025064 -
Vium2943g00004 461 Gene3D - 115 168 - -
Vium2943g00004 461 MobiDBLite consensus disorder prediction 338 375 - -
Vium2943g00004 461 Pfam IQ calmodulin-binding motif 119 137 IPR000048 GO:0005515
Vium2943g00004 461 Pfam IQ calmodulin-binding motif 140 157 IPR000048 GO:0005515
Vium2943g00004 461 MobiDBLite consensus disorder prediction 350 372 - -
Vium2943g00004 461 SMART iq_5 138 159 IPR000048 GO:0005515
Vium2943g00004 461 SMART iq_5 115 137 IPR000048 GO:0005515
Vium2943g00004 461 MobiDBLite consensus disorder prediction 403 442 - -
Vium2943g00004 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 161 IPR027417 -
Vium2943g00004 461 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2943g00004 Vium-Chr2943 14585 18910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2943g00004 1 423 IQD Protein Family AT5G62070 46.065 1.36e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2943g00004 - - gmx:100783694 661.759