Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2943g00003 ATGGGCTTTCTCCGTCGAATTTTCGGCGCCAAAAAACCCTCAGACTCCAAACCCCCCAAGAAAAGATGGGCCTTCCTCAAGCCTACAGCCCGGAACAAGTCACTCCCACCGCCACCGCCCCCTTCTGCCTTCAACGCCCACTTTGATTCTTCCAATCCTTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCTACTGCCGCCGTCGCCGAGGCCGCCCTAGCCGCTGCGCACGCCGCAGCAGAGGTTGTCAGACTCACGAGCGGCGCCACCGCCGCCACAAGTACCAGCAACAGCACAAGACCGGCTGCCGCGGCGCGTGTTAGCCAACTGCGGTTGCCGGAGCAGACTGCCGCCGTTAAGATACAATCAGCGTTCCGTGGCTACCTGGCAAGGAGGGCATTGAGAGCACTAAAAGCATTGGTGAAGCTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAAGTGCTGATATGCTGAGGCGCATGCAGACATTGGTGAGACTTCAGGCCCAGGCACGTGCAAGCCGTGCGCACTTGTCATATAATACGCCTTCTTTCAAGTCTTCCCTTTCTCACTACCCTAGATGTAGTTCCAATGCCAACTTTAGGAACGTTGACTCAGAACGACCCCGGTTTGATTCAAATTGGTTAAACCGTTGGATGGAATTAGATAACAAGTGCAGGCAAACTGGAGATGCTTCATTGAAAACTGGACGCCCAGACGATGATAAAAGTGACAAGATTCTCGAAGTAGATACTTGGAGGCCACACTTCAAGTCTCACCACAGTAGCAGCTCCTTTCAGACAGCACATTATTATTTGAGTTCTGACTACAATAATGATAACTTTATGGCACATGAGTCTCCATCAAAACGTTCGGCAAAGACTGTAAACCAAAGTTTCTCATCAAGGGAGGTGTTGCAGCTGAACTCTCTGAAGTTTCAGAAGGGGAAAGAAGAAGCGACTTCAAGAACTGCTGACAATAGTCCACAAGCTTTTTCAGCCAATTCTAGAAATGGAAGTGGTGCAAGGAGGGGTCCCTTTACACCTACCGGGAGTGAGTACTCCTGGGGTTTCTTCAGTGGCTACTCGGGTCACCCCAATTACATGGCAAATACTGAATCTTTTCAAGCCAAGGTTAGATCACAAAGTGCACCAAGACAAAGGCTGGAGTTTGACAGACACAGTTCCACTAGGAGACCTGTTCATGTGGTGGGGCCTAATTCAGACCAGGATTCAGATTTAAGAAACAAAGTCTTACCTGCTTCTAACACTGTCAACAGAATTGGGAGTAGTAATTTAAGGTGA 1317 0.5027 MGFLRRIFGAKKPSDSKPPKKRWAFLKPTARNKSLPPPPPPSAFNAHFDSSNPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGATAATSTSNSTRPAAAARVSQLRLPEQTAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQAQARASRAHLSYNTPSFKSSLSHYPRCSSNANFRNVDSERPRFDSNWLNRWMELDNKCRQTGDASLKTGRPDDDKSDKILEVDTWRPHFKSHHSSSSFQTAHYYLSSDYNNDNFMAHESPSKRSAKTVNQSFSSREVLQLNSLKFQKGKEEATSRTADNSPQAFSANSRNGSGARRGPFTPTGSEYSWGFFSGYSGHPNYMANTESFQAKVRSQSAPRQRLEFDRHSSTRRPVHVVGPNSDQDSDLRNKVLPASNTVNRIGSSNLR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2943g00003 438 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Vium2943g00003 438 PANTHER IQ-DOMAIN 5-RELATED 17 410 - -
Vium2943g00003 438 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
Vium2943g00003 438 MobiDBLite consensus disorder prediction 380 419 - -
Vium2943g00003 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 161 IPR027417 -
Vium2943g00003 438 Pfam IQ calmodulin-binding motif 140 157 IPR000048 GO:0005515
Vium2943g00003 438 Pfam IQ calmodulin-binding motif 119 137 IPR000048 GO:0005515
Vium2943g00003 438 SMART iq_5 138 159 IPR000048 GO:0005515
Vium2943g00003 438 SMART iq_5 115 137 IPR000048 GO:0005515
Vium2943g00003 438 MobiDBLite consensus disorder prediction 389 403 - -
Vium2943g00003 438 Pfam Protein of unknown function (DUF4005) 332 398 IPR025064 -
Vium2943g00003 438 MobiDBLite consensus disorder prediction 315 352 - -
Vium2943g00003 438 MobiDBLite consensus disorder prediction 327 349 - -
Vium2943g00003 438 MobiDBLite consensus disorder prediction 1 50 - -
Vium2943g00003 438 Gene3D - 115 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2943g00003 Vium-Chr2943 14585 18910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2943g00003 1 400 IQD Protein Family AT5G62070 45.735 6.24e-66 214