Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2942g00001 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAGGAGGATATCATCCTTGTCTCATACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACTCCCCATGATGAAGGAATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCGTATCTTCCCCAAAGAACAGATAATGATATCAAGAATTATTGGAACACCCATCTAAAGAAGAAGCTTAAGAAATTTCAAGCTGCCATAGATCCCCACTCAGCATCAGACTCAGCCACCAGTGGTCAGTATCTACCAAAGAGCTTTAACGACAGAAGAAGTTTAGACATGAGCAGCAGCAACAATAACCATGTCTCATCCGTTAGGCTTAGTCAGTCTCAGTCCTCCACATATGCCTCAAGCACTGAGAACATCTCTAGACTCTTGGAAGGTTGGATGAGATCTTCCCCAAAGCCACTCAAGAGATCCCAAGATCAAGAGCTCCAAAGCATTGATGATGATAACAACAACAACAGCAACAACTTTGAGACCACTAATAAACTGATGAAGTGTGCATCGCTGCCTGCTTTGAACCTTCACCATCAGCACAAAAGAAACAAAGATGAGCAAGAGGGTGGCGTAGATATGGCTTCTCATGAAGAGTTTGATTCTATTTTGTCCTTTGAGAACCTAAACAATGCTGCTTGGGACAAGTCCACATGCGATTCCATGCCTGATAAGAGTCCTGAAGCTGCTGCCGAATCTTCTCACGAAGTCTCTCAAGAAGAGAGGATCAGGCAAAAATCTGAGAACAACAGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTCTTAGATGAAAGCGTTGGTCAAGTGGAGGAGATGATGGAGTTATCTCCAATGTTCTAA 1008 0.4425 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHDEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAAIDPHSASDSATSGQYLPKSFNDRRSLDMSSSNNNHVSSVRLSQSQSSTYASSTENISRLLEGWMRSSPKPLKRSQDQELQSIDDDNNNNSNNFETTNKLMKCASLPALNLHHQHKRNKDEQEGGVDMASHEEFDSILSFENLNNAAWDKSTCDSMPDKSPEAAAESSHEVSQEERIRQKSENNSAPPLSFLEKWLLDESVGQVEEMMELSPMF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2942g00001 335 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium2942g00001 335 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium2942g00001 335 MobiDBLite consensus disorder prediction 126 172 - -
Vium2942g00001 335 CDD SANT 69 112 IPR001005 -
Vium2942g00001 335 Gene3D - 13 66 - -
Vium2942g00001 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 215 - -
Vium2942g00001 335 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium2942g00001 335 FunFam Transcription factor MYB60 68 136 - -
Vium2942g00001 335 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium2942g00001 335 SMART sant 13 63 IPR001005 -
Vium2942g00001 335 SMART sant 66 114 IPR001005 -
Vium2942g00001 335 CDD SANT 16 61 IPR001005 -
Vium2942g00001 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vium2942g00001 335 MobiDBLite consensus disorder prediction 188 216 - -
Vium2942g00001 335 MobiDBLite consensus disorder prediction 284 302 - -
Vium2942g00001 335 Gene3D - 69 135 - -
Vium2942g00001 335 FunFam MYB-related transcription factor 13 66 - -
Vium2942g00001 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vium2942g00001 335 MobiDBLite consensus disorder prediction 270 310 - -
Vium2942g00001 335 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2942g00001 Vium-Chr2942 1861 3569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2942g00001 1 136 MYB Transcription Factor Family AT5G62470 81.159 7.87e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2942g00001 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2942g00001 K09422 - gmx:100817854 535.028