Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium293g00002 ATGGAGATGGACAGCATTGACTGTGTGTCATTTTCTGATGGCATGGATGAGGATGAGATCCAACACCACACTCTGCATCCTCATAACCACTCTGAGTTTTCCTCTAACAAGCCTCGTAATGGAGGTGCTAATAGCAATAATGTTATGGGAGCCACCGCCATTTCTCCTGCAACCAGCGTTCATGAGCTGCTTGAATGCCCTGTTTGCACAAATTCAATGTACCCCCCTATTCACCAGTGTCACAATGGACACACATTGTGTTCCACTTGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGACAAGAGCTTGGGGATATTAGGTGTCTAGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTATTCCCTTGGATGTCCCGAAATCTTTCCATATTACAGCAAGCTTAAGCACGAGACTGTATGCAATTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGAGACATTCCCTTCCTTGTTGCACATTTGAGGGATGATCATAAGGTGGACATGCACACAGGTTGCACATTCAACCATCGTTATGTGAAATCCAATCCTCGTGAAGTAGAGAATGCAACTTGGATGCTAACCGTATTTCATTGTTTTGGGCAATACTTCTGCCTTCACTTCGAAGCTTTCCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTTCGATTTATGGGTGATGAGAACGAGGCTCGTAGCTACAGCTACAGCCTTGAGGTTGGGGCAAATGGCAGGAAACTCATTTGGGAGGGCACACCACGAAGTATTCGCGATAGCCACAGGAAAGTCAGGGATAGCCACGACGGTCTCATTATTCAACGAAACATGGCCTTATTTTTCTCTGGAGGTGATAAGAAAGAGCTCAAACTAAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGCTGGGGTCTGCATACCAAATCTTTGCAACTAA 987 0.4519 MEMDSIDCVSFSDGMDEDEIQHHTLHPHNHSEFSSNKPRNGGANSNNVMGATAISPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARSYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVCIPNLCN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium293g00002 328 FunFam E3 ubiquitin-protein ligase SINAT5-like 175 307 - -
Vium293g00002 328 MobiDBLite consensus disorder prediction 26 48 - -
Vium293g00002 328 CDD RING-HC_SIAHs 64 102 - -
Vium293g00002 328 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270
Vium293g00002 328 SUPERFAMILY RING/U-box 52 108 - -
Vium293g00002 328 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 45 313 - -
Vium293g00002 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 118 IPR013083 -
Vium293g00002 328 Pfam Seven in absentia protein family 108 307 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vium293g00002 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 172 IPR013083 -
Vium293g00002 328 MobiDBLite consensus disorder prediction 34 48 - -
Vium293g00002 328 FunFam E3 ubiquitin-protein ligase SINAT3 118 174 - -
Vium293g00002 328 CDD Sina 180 308 - -
Vium293g00002 328 FunFam E3 ubiquitin-protein ligase SINAT3 11 117 - -
Vium293g00002 328 SUPERFAMILY TRAF domain-like 119 311 - -
Vium293g00002 328 ProSiteProfiles Zinc finger RING-type profile. 66 102 IPR001841 -
Vium293g00002 328 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 173 307 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium293g00002 Vium-Chr293 56889 71694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium293g00002 34 314 C3H Transcription Factor Family AT2G41980 76.512 1.09e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium293g00002 K04506 - qsa:O6P43_015002 660.988