Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2931g00002 ATGGGCAACTGTTGCTCAGGTGGCACCAATGATTCTGAAAACAAGGGAGAAACCAACCAACAAAACGACAACCAAGGGGGAACGGCAACCACCCCTCCACAATCTAAGCCTAACCATCCTCCCACCAAGCACTCCAAGCCTGCCCCCATTGGGCCTGTTCTTGGAAGGCCCATGGAGGATGTTAGAAGTACTTACAGCATGGGGAAAGAGCTGGGGAGAGGCCAGTTTGGTGTCACACATTTGTGCACACACAAGAGCACAGGAAAGCAATATGCCTGCAAAACCATTGCCAAGAGAAAGCTGGTTAATAAGGAGGACATTGAGGATGTGAAAAGGGAGGTCCAGATCATGCACCATCTCTCAGGGCAGCCCAACATTGTGGAGCTTGTCAGTGTTTTTGAAGACAAACAATCTGTTCATTTGGTTATGGAGTTGTGTGCAGGGGGTGAGCTCTTTGATCGCATCATTGCAAAGGGACATTACACTGAACGTGCAGCAGCTTCCCTCTTGAGAACCATCGTGCAGATTGTCCACACCTGCCATTCCATGGGAGTCATTCACAGAGATCTTAAGCCTGAAAATTTCCTTCTCTCCAGCAAGGAGGAAAATGCACCTCTCAAGGCAACCGATTTCGGTTTATCAGTTTTTTACAAGCAAGGAGAATTGTTTAAGGACATTGTTGGAAGCGCATATTACATTGCACCAGAGGTCTTGAAGAGGAAATATGGTCCAGAAGTTGACATTTGGAGTATTGGTGTCATGCTATACATTCTTCTATCTGGTGTTCCACCATTTTGGGCAGAATCCGAAAATGGAATATTCAAGGCAATTCTGCGAGGTCATATTGACTTTACAAGCGATCCATGGCCATCCATTTCGCCTGCAGCAAAAGATCTCGTGAGGAAAATGTTGAATTCGGACCCCAGACAGAGGCTGACAGCGTACGAAGTTCTGAATCACCCATGGATCAAGGAGGATGGAGAAGCACCAGATAAACCTCTTGACAACGCAGTACTGAATAGGCTCAAGCAGTTCAGAGCAATGAACGAATTCAAGAAAGTTGCTCTAAGGGTCATCGCGGGCTGCCTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTCAAGGGGATGGACACTGACAACAGCGGCACCATTACAATTGAAGAGCTCAAACAAGGGCTTGCAAAACAAGGGACCAAGCTAACAGAACAAGAAGTCAAGCAATTAATGGAAGCCGTAAGTTCTCTCTCCTTTTCTAAGTATTGCCATTTTCTTTACTTCTGCATACTACAGGCAGATGCCGATGGCAATGGAACCATTGATTACGATGAATTCATCACAGCAACAATGCACATGAACCGCATGAACAAAGAAGATCATCTTTATACTGCCTTCCAATACTTTGACAAAGATAACAGCGGGTACATTACCATTGAAGAACTAGAACAGGCTCTTATCGAGTTCAACATGCACGATGGTAGGGACATCAAGGATATCATTTCAGAAGTTGATGCAGATAATGATGGCCGGATTAACTACGATGAATTTGCTGCAATGATGAACAAAGGAAACCTAGAAGTTAATACCAAGAAGAGGCGTGATTCAACCTTATATTAG 1620 0.4494 MGNCCSGGTNDSENKGETNQQNDNQGGTATTPPQSKPNHPPTKHSKPAPIGPVLGRPMEDVRSTYSMGKELGRGQFGVTHLCTHKSTGKQYACKTIAKRKLVNKEDIEDVKREVQIMHHLSGQPNIVELVSVFEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLSSKEENAPLKATDFGLSVFYKQGELFKDIVGSAYYIAPEVLKRKYGPEVDIWSIGVMLYILLSGVPPFWAESENGIFKAILRGHIDFTSDPWPSISPAAKDLVRKMLNSDPRQRLTAYEVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNEFKKVALRVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAVSSLSFSKYCHFLYFCILQADADGNGTIDYDEFITATMHMNRMNKEDHLYTAFQYFDKDNSGYITIEELEQALIEFNMHDGRDIKDIISEVDADNDGRINYDEFAAMMNKGNLEVNTKKRRDSTLY 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2931g00002 539 SUPERFAMILY EF-hand 363 529 IPR011992 -
Vium2931g00002 539 ProSitePatterns Protein kinases ATP-binding region signature. 71 98 IPR017441 GO:0005524
Vium2931g00002 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 60 517 - -
Vium2931g00002 539 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2931g00002 539 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Vium2931g00002 539 MobiDBLite consensus disorder prediction 1 58 - -
Vium2931g00002 539 MobiDBLite consensus disorder prediction 1 33 - -
Vium2931g00002 539 Pfam Protein kinase domain 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2931g00002 539 Gene3D Transferase(Phosphotransferase) domain 1 151 330 - -
Vium2931g00002 539 FunFam Calcium-dependent protein kinase 1 67 150 - -
Vium2931g00002 539 SMART efh_1 496 524 IPR002048 GO:0005509
Vium2931g00002 539 SMART efh_1 461 489 IPR002048 GO:0005509
Vium2931g00002 539 SMART efh_1 425 453 IPR002048 GO:0005509
Vium2931g00002 539 SMART efh_1 370 398 IPR002048 GO:0005509
Vium2931g00002 539 Pfam EF-hand domain pair 460 521 IPR002048 GO:0005509
Vium2931g00002 539 Pfam EF-hand domain pair 371 450 IPR002048 GO:0005509
Vium2931g00002 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Vium2931g00002 539 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Vium2931g00002 539 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Vium2931g00002 539 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Vium2931g00002 539 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Vium2931g00002 539 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2931g00002 539 Gene3D - 331 526 - -
Vium2931g00002 539 ProSiteProfiles EF-hand calcium-binding domain profile. 496 527 IPR002048 GO:0005509
Vium2931g00002 539 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Vium2931g00002 539 SUPERFAMILY Protein kinase-like (PK-like) 43 349 IPR011009 -
Vium2931g00002 539 ProSiteProfiles EF-hand calcium-binding domain profile. 434 456 IPR002048 GO:0005509
Vium2931g00002 539 FunFam calcium-dependent protein kinase 1 151 330 - -
Vium2931g00002 539 FunFam Calcium-dependent protein kinase 1 331 525 - -
Vium2931g00002 539 Gene3D Phosphorylase Kinase; domain 1 67 150 - -
Vium2931g00002 539 CDD STKc_CAMK 65 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2931g00002 Vium-Chr2931 16842 20237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2931g00002 1 535 EF-hand Containing Proteins AT5G12180 76.243 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium2931g00002 Pkinase 1.6e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2931g00002 K13412 - gmx:100820422 970.304