Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2918g00005 ATGAGCGCTGAAATGAATGTTTTTCCTTCACCTCCGGTTACTGTTATTGGTCTCCAGTGTTTCAACGTTTTAGGGGTGATGGGTCATGTTGGAGACATGAAATCTGAAAGTTCTGATATACCTTTTCAGATTTTGAATCCCAAACGCGTGGAGGAAGAAGAATCTTCTGGGGTTGAAGCCACTGGCTTGTCTTTGAAACCTGGTGAAGAGCTTCAAGCTAATAGTTATCCTGCTAAAGGGAAAATCAGACACACTAAGCTTTGTGCAAGAGGACATTGGAGATCAGCTGAAGATGCCAAACTTAAAGAGTTTGTTGCACAATTTGGACCTCAAAATTGGAACTCAATGGCAGAACATCTTCCAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGTTAGATCCTAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAGGAAAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCAGGTAGGACTGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAAAAGTCATGTGTCTGCAGAAGGAGAAAACCCACATTTCAGATCCTTCCACCAAAGGATTTGGATTTGATCTTGCCAGTGAATGGATGCAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTGCCTCAACAGGAACTAACCTCTCCTTCACTTCCTCTTCAGCAAAATCAACTCCTCTGCCTTTTCTAAACCATTGTCAAGTTCAGAATCTCCAAACCTTTGGTGGTGCTCTAATGGGTTTATCTGGGAAAAGCAGGACACCAGACAGGAATGTGAGTTTCAACAAGCATTTTGATGCTGGGAAAGGTTCATCTGAGACTGGACACATGGGAAGGGTAATGGGTGTGGACCAATCTCATTACTCAGATTCAAACTCATCAGAAGTTTCAGAATCAGTTGCCACCAACAAGACTACCAATTTATCAATGTATGGGAAAAGTGATAAAAGGGCCAACATGTTATTCATTGATTTTCTTGGAGTAGGAACTACATAA 1077 0.4169 MSAEMNVFPSPPVTVIGLQCFNVLGVMGHVGDMKSESSDIPFQILNPKRVEEEESSGVEATGLSLKPGEELQANSYPAKGKIRHTKLCARGHWRSAEDAKLKEFVAQFGPQNWNSMAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVCRRRKPTFQILPPKDLDLILPVNGCSESTISSTIIDESASTGTNLSFTSSSAKSTPLPFLNHCQVQNLQTFGGALMGLSGKSRTPDRNVSFNKHFDAGKGSSETGHMGRVMGVDQSHYSDSNSSEVSESVATNKTTNLSMYGKSDKRANMLFIDFLGVGTT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2918g00005 358 ProSiteProfiles Myb-like domain profile. 137 187 IPR001005 -
Vium2918g00005 358 SMART sant 141 189 IPR001005 -
Vium2918g00005 358 SMART sant 89 138 IPR001005 -
Vium2918g00005 358 ProSiteProfiles Myb-like domain profile. 90 136 IPR001005 -
Vium2918g00005 358 SUPERFAMILY Homeodomain-like 90 183 IPR009057 -
Vium2918g00005 358 MobiDBLite consensus disorder prediction 312 328 - -
Vium2918g00005 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 191 IPR017930 -
Vium2918g00005 358 PANTHER MYB PROTEIN-RELATED 90 312 - -
Vium2918g00005 358 MobiDBLite consensus disorder prediction 292 328 - -
Vium2918g00005 358 Pfam Myb-like DNA-binding domain 142 185 IPR001005 -
Vium2918g00005 358 Pfam Myb-like DNA-binding domain 90 136 IPR001005 -
Vium2918g00005 358 CDD SANT 93 134 IPR001005 -
Vium2918g00005 358 Gene3D - 90 141 - -
Vium2918g00005 358 FunFam MYB transcription factor 90 141 - -
Vium2918g00005 358 Gene3D - 143 202 - -
Vium2918g00005 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 136 IPR017930 -
Vium2918g00005 358 CDD SANT 144 184 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2918g00005 Vium-Chr2918 104353 106552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2918g00005 85 193 MYB Transcription Factor Family AT5G17800 82.569 2.07e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2918g00005 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2918g00005 K09422 - qsa:O6P43_009928 333.183