Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2918g00004 ATGAGTAACTCACTACACTTGAGGAATGGTGGTAGTGGATTCAGTGCTGAAATGAATGTTTTCCCTTTAGCTTCTGTTCCTGTTCTTGCTCTCCAGTGTTCAAACACTTTGGGGTTCATGGGTCATGTTGGAGGAACAGAAACTGAATGTTCTGACATGCCCTTTAAGAATTTGAACTCCTCACTGATCCAACACCAGGAGAAAGAAGAAGAATGTTTTGGGATTCAGAATAAGGACTTGTCTTTGAGACCTGGTGAAGAACTTGAAGCTAAGGGTTCTTCATTCACAGAGAAAATTAGACAGACCAAGCTTTGTGCAAGAGGACATTGGAGGCCAGTTGAAGATGCCAAACTTAAAGAGCTTGTTGCACAATTGGGACCTCAAAATTGGAACTCCATAGCAGAACATCTTCCTGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGAAAGGCTTTCGGTGAGGAAGAAGAGGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGGACTGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAAAAGTCATGTGTCTTCAGAAGGAGAAAACCCACATTTCAGATCCTTCCACCAAAGGATTTGGATTTGATCTTGCCAGTGAATGGA 714 0.4244 MSNSLHLRNGGSGFSAEMNVFPLASVPVLALQCSNTLGFMGHVGGTETECSDMPFKNLNSSLIQHQEKEEECFGIQNKDLSLRPGEELEAKGSSFTEKIRQTKLCARGHWRPVEDAKLKELVAQLGPQNWNSIAEHLPGRSGKSCRLRWFNQLDPRINRKAFGEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVFRRRKPTFQILPPKDLDLILPVNG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2918g00004 238 CDD SANT 164 201 IPR001005 -
Vium2918g00004 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 208 IPR017930 -
Vium2918g00004 238 ProSiteProfiles Myb-like domain profile. 107 153 IPR001005 -
Vium2918g00004 238 SMART sant 158 206 IPR001005 -
Vium2918g00004 238 SMART sant 106 155 IPR001005 -
Vium2918g00004 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 153 IPR017930 -
Vium2918g00004 238 SUPERFAMILY Homeodomain-like 107 200 IPR009057 -
Vium2918g00004 238 FunFam MYB transcription factor 107 158 - -
Vium2918g00004 238 Gene3D - 160 219 - -
Vium2918g00004 238 Pfam Myb-like DNA-binding domain 159 202 IPR001005 -
Vium2918g00004 238 Pfam Myb-like DNA-binding domain 107 153 IPR001005 -
Vium2918g00004 238 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Vium2918g00004 238 Gene3D - 107 158 - -
Vium2918g00004 238 CDD SANT 110 151 IPR001005 -
Vium2918g00004 238 PANTHER MYB PROTEIN-RELATED 107 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2918g00004 Vium-Chr2918 57525 58529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2918g00004 106 226 MYB Transcription Factor Family AT1G69560 76.860 5.56e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2918g00004 Myb_DNA-binding 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2918g00004 K09422 - gmx:100791795 258.84