Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2918g00003 ATGAGTAACTCACTACACTTGAGGAATGGTGGTAGTGGATTCAGTGCTGAAATGAATGTTTTCCCTTTAGCTTCTGTTCCTGTTCTTGCTCTCCAGTGTTCAAACACTTTGGGGTTCATGGGTCATGTTGGAGGAACAGAAACTGAATGTTCTGACATGCCCTTTAAGAATTTGAACTCCTCACTGATCCAACACCAGGAGAAAGAAGAAGAATGTTTTGGGATTCAGAATAAGGACTTGTCTTTGAGACCTGGTGAAGAACTTGAAGCTAAGGGTTCTTCATTCACAGAGAAAATTAGACAGACCAAGCTTTGTGCAAGAGGACATTGGAGGCCAGTTGAAGATGCCAAACTTAAAGAGCTTGTTGCACAATTGGGACCTCAAAATTGGAACTCCATAGCAGAACATCTTCCTGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGAAAGGCTTTCGGTGAGGAAGAAGAGGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGGACTGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAAAAGTCATGTGTCTTCAGAAGGAGAAAACCCACATTTCAGATCCTTCCACCAAAGGATTTGGATTTGATCTTGCCAGTGAATGGAGGCAGTGAATCAACCATTTCCAGCACCATCATTGATGAATCTGCCTCAACAGGAACTAACCTCTCCTTCACACCCTCTCTAGCCAAACCAACTCCTCTGCCTTTCCTAAACCATTGTCATGTTCAGAATCTGCAAACTTTTGGTGGTTCTCTAATGGGTTTATCTGGAGAAGGCAGAAAAGCACTGAGAGAAGTGAGTTTTGGCATGTATTTTGGTGGTTGGAGGGATTCATTTCAGGTTGGACACATGGAAAGGCTAATGCGTGTGGATCAATCTAATTATTCAGAGTCAAACTCATCAGAAGTTTCGATATCTGAGTCAGTTGCCACCAACGACACTACCAATCTCTCAATTTCTGGGGAAAATGAAAACATGGGTAATAACAAGGCCAACAAAATGATATTCATTGACTTTCTTGGAGTAGGAGCTGCGTAA 1149 0.4238 MSNSLHLRNGGSGFSAEMNVFPLASVPVLALQCSNTLGFMGHVGGTETECSDMPFKNLNSSLIQHQEKEEECFGIQNKDLSLRPGEELEAKGSSFTEKIRQTKLCARGHWRPVEDAKLKELVAQLGPQNWNSIAEHLPGRSGKSCRLRWFNQLDPRINRKAFGEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVFRRRKPTFQILPPKDLDLILPVNGGSESTISSTIIDESASTGTNLSFTPSLAKPTPLPFLNHCHVQNLQTFGGSLMGLSGEGRKALREVSFGMYFGGWRDSFQVGHMERLMRVDQSNYSESNSSEVSISESVATNDTTNLSISGENENMGNNKANKMIFIDFLGVGAA 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2918g00003 382 CDD SANT 164 201 IPR001005 -
Vium2918g00003 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 208 IPR017930 -
Vium2918g00003 382 Pfam Myb-like DNA-binding domain 159 202 IPR001005 -
Vium2918g00003 382 Pfam Myb-like DNA-binding domain 107 153 IPR001005 -
Vium2918g00003 382 PANTHER MYB PROTEIN-RELATED 107 333 - -
Vium2918g00003 382 ProSiteProfiles Myb-like domain profile. 107 153 IPR001005 -
Vium2918g00003 382 SMART sant 158 206 IPR001005 -
Vium2918g00003 382 SMART sant 106 155 IPR001005 -
Vium2918g00003 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 153 IPR017930 -
Vium2918g00003 382 Gene3D - 107 158 - -
Vium2918g00003 382 Gene3D - 160 219 - -
Vium2918g00003 382 SUPERFAMILY Homeodomain-like 107 200 IPR009057 -
Vium2918g00003 382 FunFam MYB transcription factor 107 158 - -
Vium2918g00003 382 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Vium2918g00003 382 CDD SANT 110 151 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2918g00003 Vium-Chr2918 52111 54019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2918g00003 102 273 MYB Transcription Factor Family AT5G17800 59.195 3.57e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2918g00003 Myb_DNA-binding 7.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2918g00003 K09422 - qsa:O6P43_009928 342.813