Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2918g00002 ATGGAAGATCATCAGGGGCAAGAGCAGCAGCAGCAACAGCAAAAGCAGCAACAACAACAGCAACCCAATAGTCCAAACCAACAAGCCTCCGAGAGAACCGAACCCGTGAGGTCAAGATGGACTCCCAAGCCAGAACAAATCCTTATTCTCGAGTCCATCTTCAACAGCGGCATGGTTAACCCACCAAAAGATGAAACCGTCAGAATAAGGAAGCTGCTTGAGAAATTTGGCACCGTCGGTGATGCCAACGTCTTCTACTGGTTCCAAAACCGCCGCTCTCGCTCCCGCCGCCGCCAACGCCAGATTCAGGCCACCCTTAACCAGGGTGGCGGTGCAAGTACCAATCCATTTCAACCCCACCATCAAAACAACCCTGCTCTTGTTGCAAACTTGGGTTTTGGTTGTGCCACTTCCTCTTTCCTTAACCCATCTTATATACCACCTCGTTCTTCTTCTTCTTCTTCCTCCTGCGGTGGTGCTGCTGCTGAAGAAAGCTTCGATGATTTCTTCCCACCGTCTACTCAAATGGGTTTTCCTGGAATTGACCATCATGCCTCGGCTGCATCATCTTCATCAGTTTTGTACCCTCTTGAAGCTTCCAATTTGAACTATCACTCTGGATTTGGGGGAATTTCAGGACTCATCACAGTGTTCATCAATGGGGTTCCAACAGAAGTTCCAAGGGGGCCAATGGACATCAAAACAGCTTTTGGTGAAGATGTAATGTTAGTTCATTCCTCTGGAATTTCAGTTCCCACCAATGAGTTCGGTTTCTTGATGCAGGGCTTGCAGCATGGTGAAAGCTACTTTGTGGTTTCAAAGCAAACACAAGTATGA 837 0.4803 MEDHQGQEQQQQQQKQQQQQQPNSPNQQASERTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQIQATLNQGGGASTNPFQPHHQNNPALVANLGFGCATSSFLNPSYIPPRSSSSSSSCGGAAAEESFDDFFPPSTQMGFPGIDHHASAASSSSVLYPLEASNLNYHSGFGGISGLITVFINGVPTEVPRGPMDIKTAFGEDVMLVHSSGISVPTNEFGFLMQGLQHGESYFVVSKQTQV 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2918g00002 278 SMART HOX_1 35 102 IPR001356 GO:0003677
Vium2918g00002 278 ProSiteProfiles 'Homeobox' domain profile. 33 98 IPR001356 GO:0003677
Vium2918g00002 278 MobiDBLite consensus disorder prediction 1 42 - -
Vium2918g00002 278 FunFam WUSCHEL-related homeobox 11 37 104 - -
Vium2918g00002 278 Pfam Homeodomain 37 97 IPR001356 GO:0003677
Vium2918g00002 278 MobiDBLite consensus disorder prediction 100 123 - -
Vium2918g00002 278 Coils Coil 1 21 - -
Vium2918g00002 278 MobiDBLite consensus disorder prediction 96 123 - -
Vium2918g00002 278 MobiDBLite consensus disorder prediction 7 35 - -
Vium2918g00002 278 Gene3D - 37 104 - -
Vium2918g00002 278 PANTHER WUSCHEL-RELATED HOMEOBOX 11 16 275 IPR044558 GO:0003700|GO:0048830
Vium2918g00002 278 SUPERFAMILY Homeodomain-like 32 105 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2918g00002 Vium-Chr2918 15596 17928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2918g00002 18 278 Wox Gene Family AT3G03660 53.191 3.14e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium2918g00002 Homeodomain 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2918g00002 - - aprc:113866574 362.844