Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2918g00001 ATGGAAGATCATCAGGGGCAAGAGCAGCAGCAGCAACAGCAAAAGCAGCAACAACAACAGCAACCCAATAGTCCAAACCAACAAGCCTCCGAGAGAACCGAACCCGTGAGGTCAAGATGGACTCCCAAGCCAGAACAAATCCTTATTCTCGAGTCCATCTTCAACAGCGGCATGGTTAACCCACCAAAAGATGAAACCGTCAGAATAAGGAAGCTGCTTGAGAAATTTGGCACCGTCGGTGATGCCAACGTCTTCTACTGGTTCCAAAACCGCCGCTCTCGCTCCCGCCGCCGCCAACGCCAGATTCAGGCCACCCTTAACCAGGGTGGCGGTGCAAGTACCAATCCATTTCAACCCCACCATCAAAACAACCCTGCTCTTGTTGCAAACTTGGGTTTTGGTTGTGCCACTTCCTCTTTCCTTAACCCATCTTATATACCACCTCGTTCTTCTTCTTCTTCTTCCTCCTGCGGTGGTGCTGCTGCTGAAGAAAGCTTCGATGATTTCTTCCCACCGTCTACTCAAATGGGTTTTCCTGGAATTGACCATCATGCCTCGGCTGCATCATCTTCATCAGTTTTGTACCCTCTTGAAGCTTCCAATTTGAACTATCACTCTGGATTTGGGGGAATTTCAGGACTCATCACAGTGTTCATCAATGGGGTTCCAACAGAAGTTCCAAGGGGGCCAATGGACATCAAAACAGCTTTTGGTGAAGATGGCTTGCAGCATGGTGAAAGCTACTTTGTGGTTTCAAAGCAAACACAAGTATGA 774 0.4858 MEDHQGQEQQQQQQKQQQQQQPNSPNQQASERTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQIQATLNQGGGASTNPFQPHHQNNPALVANLGFGCATSSFLNPSYIPPRSSSSSSSCGGAAAEESFDDFFPPSTQMGFPGIDHHASAASSSSVLYPLEASNLNYHSGFGGISGLITVFINGVPTEVPRGPMDIKTAFGEDGLQHGESYFVVSKQTQV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2918g00001 257 SMART HOX_1 35 102 IPR001356 GO:0003677
Vium2918g00001 257 ProSiteProfiles 'Homeobox' domain profile. 33 98 IPR001356 GO:0003677
Vium2918g00001 257 MobiDBLite consensus disorder prediction 1 42 - -
Vium2918g00001 257 PANTHER WUSCHEL-RELATED HOMEOBOX 11 16 240 IPR044558 GO:0003700|GO:0048830
Vium2918g00001 257 MobiDBLite consensus disorder prediction 100 123 - -
Vium2918g00001 257 Gene3D - 37 104 - -
Vium2918g00001 257 Coils Coil 1 21 - -
Vium2918g00001 257 MobiDBLite consensus disorder prediction 96 123 - -
Vium2918g00001 257 MobiDBLite consensus disorder prediction 7 35 - -
Vium2918g00001 257 SUPERFAMILY Homeodomain-like 32 105 IPR009057 -
Vium2918g00001 257 Pfam Homeodomain 37 97 IPR001356 GO:0003677
Vium2918g00001 257 FunFam WUSCHEL-related homeobox 11 37 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2918g00001 Vium-Chr2918 15595 17928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2918g00001 16 257 Wox Gene Family AT3G03660 47.887 1.67e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium2918g00001 Homeodomain 9.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2918g00001 - - aprc:113866574 310.071