Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2915g00006 ATGGGAACTGTGGCAAGAGAGCATTCGATTGGGGAGTTTGGGTCAACAGAGAGAAAGCAGGGAACAGAAGAAAAAGAAAGCCTCAACGTTTTCGGCGTCATGGATCCGCTGCCGGCAGCGCTCCGGTGGCGCACGACCGCCATCCCATTCCTCTTGGCGGTCCTCCTTTTATCCTCCGTTTCCCCTTCGCGCGCAATCTACTGCGACGAAGATGATTGCTACGATCTGCTTGGGGTTTCTCAGAGTGCCAATGCTTCCGAAATCAAGAAAGCTTACTACAAACTCTCCTTGAAGCATCATCCAGATAAGAACCCTGATCCCGAATCGCGAAAGCTGTTTGTTAAAATCGCCAATGCTTACGAGATTTTGAAGGACGAGGCCACGCGCGAACAATATGATTATGCAATTGCACATCCAGAGGAGGTGCTTTATAATACTGCACGCTACTATCGGGCATACTATGGTCACAAGACGGATCCTCGAGCTGTGTTGGTTGGCCTTCTTATTATTCTTTCAGGTTTTCAATATCTAAATCAATCAACAAGGTATAATCAGGCTGTAGCCATGGTCAAGAAGACACCTGCATATAAAAATAAACTAAGGGCATTGGAACTTGAACGCAGTGGAGGGATTACAAACAAGAAGAAGAGTCAGAAGAATACGGTCAAGAAAGTGGAGCAAGACCTTAGCAATGAACTCGACCTGCAGATAACTGGAGCTGAAAGGGCCTCTGTGTGGAAACTTCTTGGTGTCCGCTTTGTTCTATTACCTTATACCTTAGGCAAGCTGCTACTGTGGTCTGCCTGCTGGTTTTGGAGATACAGAGTGAAGAAACACTCTTATTCTTGGGAGGATGCTTCTTATCTGACACAACGATCCCTTGGTATTCCTCTCGATAGATGGAGACATATTGATGAAGCAACAAAGGAAGATCTTGTGCTCAAACGCTTATGGGAGAAATCGAATATGGAGAGCTATGTAGCAGAGATGCGGAAAGAATCAAAACGCAGAAGATAG 1017 0.4602 MGTVAREHSIGEFGSTERKQGTEEKESLNVFGVMDPLPAALRWRTTAIPFLLAVLLLSSVSPSRAIYCDEDDCYDLLGVSQSANASEIKKAYYKLSLKHHPDKNPDPESRKLFVKIANAYEILKDEATREQYDYAIAHPEEVLYNTARYYRAYYGHKTDPRAVLVGLLIILSGFQYLNQSTRYNQAVAMVKKTPAYKNKLRALELERSGGITNKKKSQKNTVKKVEQDLSNELDLQITGAERASVWKLLGVRFVLLPYTLGKLLLWSACWFWRYRVKKHSYSWEDASYLTQRSLGIPLDRWRHIDEATKEDLVLKRLWEKSNMESYVAEMRKESKRRR 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2915g00006 338 ProSitePatterns Nt-dnaJ domain signature. 113 132 IPR018253 -
Vium2915g00006 338 ProSiteProfiles dnaJ domain profile. 72 136 IPR001623 -
Vium2915g00006 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 25 50 337 IPR044632 GO:0006457
Vium2915g00006 338 MobiDBLite consensus disorder prediction 1 22 - -
Vium2915g00006 338 PRINTS DnaJ domain signature 92 107 IPR001623 -
Vium2915g00006 338 PRINTS DnaJ domain signature 108 128 IPR001623 -
Vium2915g00006 338 PRINTS DnaJ domain signature 74 92 IPR001623 -
Vium2915g00006 338 FunFam Chaperone protein dnaJ 50 59 159 - -
Vium2915g00006 338 Gene3D DnaJ domain 58 159 IPR036869 -
Vium2915g00006 338 CDD DnaJ 72 125 IPR001623 -
Vium2915g00006 338 Pfam DnaJ domain 72 133 IPR001623 -
Vium2915g00006 338 SMART dnaj_3 71 128 IPR001623 -
Vium2915g00006 338 SUPERFAMILY Chaperone J-domain 67 139 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2915g00006 Vium-Chr2915 32739 36285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2915g00006 74 144 C2H2 Transcription Factor Family AT1G74250 32.468 6.11e-06 46.2