Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2913g00004 ATGGCGAGGAAGCGAAAACAGCCACCTCGTCCCGCCAAATCGGCAGAGCGCGCTTTCAAACAGCAACAACAAGAACAGCCACAGTTGAATCTAGAATCAGAGTATAAAGAAGAGGAACAATACGAAGAAGAAGAAGAAAGCCAAGAAATTGAAGAAGAATTAGCACCAATCAATGAAACCTCGAAGCCCCCCTCCACTTCTTCCTCCTCTCCAAGCGACGACGAGGAGCCAATCCAGAACCTTCTAGAATCCCTCGGCAAGAATGAGATCGCCAAATTTCTCATCGAGGCCGCCTCCAAGCACCGCGACGTGGCGGACCGGATACGCCGCACCGCCGACGCCGACCCCGCGCACCGGAAGATCTTCGTGCACGGCCTCGGCTGGGACACCACCGCCGACACCCTCACTACCGCGTTCTCCCCCTACGGCGACATCGAGGACTGCAAGGCCGTCGTGGACAAGGCCACTGGCAAGTCCAAGGGCTACGGCTTCGTCCTCTTCAAGACCCGTCGCGCTGCGCGCAATGCCCTCCGCGAGCCGCAGAAAAGGATCGGCAACCGCATTGCCGCATGCCAGCTGGCGTCCGTGGGCCCAGTCCAGTCGTCGCCGGCGACGATTTCGACGGCGCCGGGGGCTTCGGATTTCTTGCAGAGGAAGATCTACGTGAGCAATGTGAGTGGGGAATTGGACCCGCAGAGGCTTCTGTCGTTTTTTGCGCAGTTTGGGGAGATTGAGGAAGGACCTTTAGGACTTGATAAGGTAACTGGGAAACCGAAAGGGTTCTGTTTATTTGTTTATAAGGGTGTGGAGGGTGCAAAGCGGGCGTTGGAGGTGCCGCACAAGAAGTTTGAGGGGCATATTTTGCACTGCCAGAAGGCAATTGATGGTCAGAAGCAACAGCGAGTGGGGGTGGTTCCGGGTAGTTCTCAGAATGGCGGGTATGTTGGTATGGGGGCAGTGCCGGGACACTTGATGGCTCCGGCGGGGCCAGCGGTAGGAGGAGGCGTTGCAGGGACGGCGGTGCAACCAGTTAATCCGGCAGTTGGGCAGGCACTAACGGCATTGCTGGCATCTCGGAGTGCCGGGTTGCAATTGAGTGGGTTCTTGGGTATTGGGTCACCGGGGACGAACACTGGCGGTTATGTTGGACAAGGGAGTGTGAATCCCGGGGCTGTTGCTGTTGGTGGGTATGGGGGGAATCAAGTAGCGTTGCCAGGTTCATATGCAAGCCAGCAGCAGGTGGGGATAGGTGGATCTGGAAGGGTGCAGCAGCCTCATGGTGTGGGACAGTATGGTGGCGTTGTGCCTTACATGGGTCACTAG 1323 0.5745 MARKRKQPPRPAKSAERAFKQQQQEQPQLNLESEYKEEEQYEEEEESQEIEEELAPINETSKPPSTSSSSPSDDEEPIQNLLESLGKNEIAKFLIEAASKHRDVADRIRRTADADPAHRKIFVHGLGWDTTADTLTTAFSPYGDIEDCKAVVDKATGKSKGYGFVLFKTRRAARNALREPQKRIGNRIAACQLASVGPVQSSPATISTAPGASDFLQRKIYVSNVSGELDPQRLLSFFAQFGEIEEGPLGLDKVTGKPKGFCLFVYKGVEGAKRALEVPHKKFEGHILHCQKAIDGQKQQRVGVVPGSSQNGGYVGMGAVPGHLMAPAGPAVGGGVAGTAVQPVNPAVGQALTALLASRSAGLQLSGFLGIGSPGTNTGGYVGQGSVNPGAVAVGGYGGNQVALPGSYASQQQVGIGGSGRVQQPHGVGQYGGVVPYMGH 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2913g00004 440 SMART rrm1_1 120 192 IPR000504 GO:0003723
Vium2913g00004 440 SMART rrm1_1 219 291 IPR000504 GO:0003723
Vium2913g00004 440 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 32 295 - -
Vium2913g00004 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 301 IPR000504 GO:0003723
Vium2913g00004 440 SUPERFAMILY RNA-binding domain, RBD 217 316 IPR035979 GO:0003676
Vium2913g00004 440 Gene3D - 210 320 IPR012677 -
Vium2913g00004 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 186 IPR000504 GO:0003723
Vium2913g00004 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 288 IPR000504 GO:0003723
Vium2913g00004 440 SUPERFAMILY RNA-binding domain, RBD 111 199 IPR035979 GO:0003676
Vium2913g00004 440 Coils Coil 31 51 - -
Vium2913g00004 440 MobiDBLite consensus disorder prediction 36 53 - -
Vium2913g00004 440 MobiDBLite consensus disorder prediction 59 77 - -
Vium2913g00004 440 MobiDBLite consensus disorder prediction 1 77 - -
Vium2913g00004 440 Gene3D - 4 202 IPR012677 -
Vium2913g00004 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 211 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2913g00004 Vium-Chr2913 35400 43497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2913g00004 214 293 C2H2 Transcription Factor Family AT2G19380 35.000 1.11e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2913g00004 K12741 - rcu:8268908 423.705