Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2911g00005 ATGGCAGAAAGGGTAGTTACCTTTGTTTTAGATCACTTAGCCCAGCTTGCCGCACGCGAAGTTAACTTGCTGTATGGCGTGGAGGATAGAGTCCAGTCCCTCCAGTACGAACTTCAGATGATCAAAGAGCTCCTCAATACCACAAAGAAAAAGAAGGGAATGGAACATACTGTATTCAACCACATCAGAGATGTGGCCCACTTAGCTGAGGATGTCATCGACACTTTCGTAGCCAAAGTTTCCATTTACAAGAGGAGAACCATTATGGGGAGGATGCTCTGTGGCTTTGGCCAAGCAAGGTTGCTCCACAACGTAACCGACAAAATTGACAAGCTCAAAACCACTCTCAATGAGATACGCGACAACAAGGACAAATATGACGCTTTCAAAGAAACCACTAATCAATCCACAGCAGAAGCAGAAGAGGAGGAGGAGAAGAAAAGGTTGCAATCGCTACAGAAGCTAAGAAGAGATGTGGAGGAAGAACATGTGGTTGGCTTTGTCCAAGACTCCAAGGATGTCGTCAAGAGACTCGTGGGAGGTGGTTCAACTCGTAAAGTTGTCTCTATCGTTGGCATGGGGGGATTGGGGAAGACCACCCTTGCCCGAAAGGTCTATAATAGCAGCCAGGTGAAGAACCACTTCGATTGTCGTGCATGGGTTTATGTCTCAAACGAGTGTAGAGTTCATGATCTTTTGATTGACCTTCTTAAGCATTTGATGCCAAATTTTGAACAGCAACGTAGAGGCAACAAAAGAGGTAAGAAAAGCGTAGGAGACATTAACGACCTTAGTAACGAGGAACTGAAGAAATTGGTGCGAAACTGCTTGGAGTGGAAAAGGTATCTTGTGGTGGTAGATGACCTGTGGAAAAAACAAGATTGGGATGAGGTGCAAGATGCTTTTCCGGACAACAACAAAGGCAGCATAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGTGATGATGTTCCTCACTATCTTCAATTCCTGAGTGAAGAAGAAAGTTGGGAGTTGTTTGGCAGGAAAGTGTTCAGAGGTGAAAACTTGCCTTCTGATTTGGAGCCTCTAGGAAAGCAAATGGTTCAAAGTTGTCGTGGTTTGCCGCTCTCCATCATTGTTTTAGCAGGGCTGCTAGCCAACAAGGAAAAGTCACATAGAGAATGGTCTAAAGTGGTGGATCATGTTAATTGGTATCTCACTCGAGATGAGACTCAGGTGAAAGATATAGTTCTCAAACTCAGTTACGACAACTTGCCAAGTAGACTAAAACCATGTTTTCTCTATCTTGGGTTATTTCCTGAAGACTTTGAAATACCTGTTACGCCATTATTGCAAAAATGGGTTGCGGAGGGTTTTATACAAGATACAGGAAATAGAGATCCAGATGATGTTGCGGAAGACTACTTGTATGAACTCATCAATCGCAGTTTGGTCCAAGTAACAGGAGTGAAATTTAATGGAGGTTTAGAGATGTGTAAGGTTCATGATCTTCTTCGAGATCTTTGCATATCAGAGAGCAAAGAGGACAAAGTGTTTGAAGTTTGCACAAACAATAACATTCTAATCCCTACCAAACCTCGCAGACTCTCCATTCACAGTGACATAGGTCATTACATTTCTTCAAGCAACAATGACCATTCATGTATTCGTTCCCTGTTTTTCTTTGGGCCACATTATGAGGTTCATGGCAGAGAGTGGAAATGGCTTTTGGACGACTTCAAATTGGTTCGAGTGTTAGAGTTTGGACCTAACAGTTGCCACAAGATCCCTTCCAATTTAGGAAACTTCATCCACTTAAGCTTCCCACAGCTGGAAGTGTTGGAAATTAAATATATGCGACTTCGAAAGTGGGAAATAGGCAATGGTGCAATGCGGAGGCTTCAAAATGTGATTATCCACAAATGTCCACTGTTAGATAATCTCCCAACTGAACTATTTTTTTTGAATGAATTGAGAAAAGTGAATATAACGGAATCTCCCTCAGAACAAATGGCGCACATCTTACAAATTTTAGAAACAAATAATAGAGTTGAAGTTGTTATAGGGACTACCTCTTGA 2073 0.4231 MAERVVTFVLDHLAQLAAREVNLLYGVEDRVQSLQYELQMIKELLNTTKKKKGMEHTVFNHIRDVAHLAEDVIDTFVAKVSIYKRRTIMGRMLCGFGQARLLHNVTDKIDKLKTTLNEIRDNKDKYDAFKETTNQSTAEAEEEEEKKRLQSLQKLRRDVEEEHVVGFVQDSKDVVKRLVGGGSTRKVVSIVGMGGLGKTTLARKVYNSSQVKNHFDCRAWVYVSNECRVHDLLIDLLKHLMPNFEQQRRGNKRGKKSVGDINDLSNEELKKLVRNCLEWKRYLVVVDDLWKKQDWDEVQDAFPDNNKGSIILITSRLKEVALHAGDDVPHYLQFLSEEESWELFGRKVFRGENLPSDLEPLGKQMVQSCRGLPLSIIVLAGLLANKEKSHREWSKVVDHVNWYLTRDETQVKDIVLKLSYDNLPSRLKPCFLYLGLFPEDFEIPVTPLLQKWVAEGFIQDTGNRDPDDVAEDYLYELINRSLVQVTGVKFNGGLEMCKVHDLLRDLCISESKEDKVFEVCTNNNILIPTKPRRLSIHSDIGHYISSSNNDHSCIRSLFFFGPHYEVHGREWKWLLDDFKLVRVLEFGPNSCHKIPSNLGNFIHLSFPQLEVLEIKYMRLRKWEIGNGAMRRLQNVIIHKCPLLDNLPTELFFLNELRKVNITESPSEQMAHILQILETNNRVEVVIGTTS 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2911g00005 690 Gene3D - 141 328 IPR027417 -
Vium2911g00005 690 CDD RX-CC_like 2 121 IPR038005 -
Vium2911g00005 690 FunFam Probable disease resistance protein At1g63360 420 509 - -
Vium2911g00005 690 Pfam NB-ARC domain 172 422 IPR002182 GO:0043531
Vium2911g00005 690 Pfam Rx N-terminal domain 5 81 IPR041118 -
Vium2911g00005 690 PRINTS Disease resistance protein signature 276 290 - -
Vium2911g00005 690 PRINTS Disease resistance protein signature 187 202 - -
Vium2911g00005 690 PRINTS Disease resistance protein signature 369 383 - -
Vium2911g00005 690 Gene3D - 334 419 IPR042197 -
Vium2911g00005 690 Coils Coil 126 162 - -
Vium2911g00005 690 FunFam Probable disease resistance protein At1g61300 146 329 - -
Vium2911g00005 690 Gene3D - 5 96 - -
Vium2911g00005 690 Gene3D Ribonuclease Inhibitor 508 684 IPR032675 -
Vium2911g00005 690 SUPERFAMILY L domain-like 491 663 - -
Vium2911g00005 690 PANTHER DISEASE RESISTANCE PROTEIN RP 34 662 IPR044974 GO:0006952
Vium2911g00005 690 Coils Coil 102 122 - -
Vium2911g00005 690 Gene3D - 420 507 IPR036388 -
Vium2911g00005 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 434 IPR027417 -
Vium2911g00005 690 FunFam Probable disease resistance protein At5g66910 334 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2911g00005 Vium-Chr2911 34761 37570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2911g00005 186 437 WRKY Transcription Factor Family AT5G45050 25.882 2.92e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2911g00005 - - vra:106779091 1035.02