LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2911g00004	ATGGCAGAGAGTGTAGTTACCTTTGTTTTAGATCACTTAGCCCAGCTTGCCTCACGCGAAGCTAACTTGCTGTGTGGCGTGGAGGACAGGGTCCAGTCCCTCCAGTACGAACTTCAAATGATCAAAGAGCTACTCAATACCACAAAGAGAAAGAAGGGAATGGAACATACTGTATTGAACCAAATCAGAGATGTGGCCCACTTAGCTGAGGATGTCATCGACACTTTCGTAGCCAAAGTTTCCATTTACAAGAGGAGAACCATTCTAGGGAGGATGCTCCGTGGCTTTGGCCAAGAAAGGTTGCTCCACCACGTAGCCCACAAAATAGACAAGCTCAAAACCACTCTCAACGAGATACGCGACAACAAGGACAAATATGATGCTTTCAAAGAAACCACTGATCAATCCGCAGTGGAAGAGGAGGAGAAGGAAAGGTTGCAATTGCTGCACAAGCTAAGAAGAGACGTGGAGGAAGAAAATGTAGTTGGCTTTGTCCACGACTCCAAGGATGTCGTCAAGCGACTCCTAGGAGGTGGTTCAAATCGTGAAGTTGTCTCTGTCGTTGGCATGGGGGGATTGGGGAAGACCACCCTTGCCCGAAAGGTCTATAATAGCAGCCAGGTGATGAGCCACTTCGATTGTCATGCATGGGTTTATGTCTCAAACGAGTGTAGAGTTCATGATCTTTTGATTGACCTTCATAAGCATTTGATGCCAGATTTTGAACAGCAACGTAGAGGCAACAAAAGAGGCAACAAAAGCGCAGGAGACATTAAGGACCTTAGTAAGGAGGAACTGAAGAAACATGTGTGGAACTACTTGGAGAGGAAAAGGTATCTTGTGGTGGTAGATGACTTGTGGAAAAGGCAGGATTGGGATGACGTGCAAGATGCTTTTCCAGACAACAACAGAGGCAGCAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGTGATGATGATCCTCACCATCTTCAATTCCTTAGTGAAAAAGAAAGTTGGAAGTTGTTTTGCCGGAAAGCGTTTAGGGGTAAAAACTGCCCTTCTGATTTGGAGCCTCTAGGAAAGCAAATGGTTCAAAGTTGTCGTGGTTTGCCGCTCTCCATCGTTGTTTTAGCAGGGCTGCTAGCCAAGAAGGAAAAGTCAGATCGTGAATGGTCTAAAGTGGTAGGTCATGTTAATTGGTATCTGACTCGAGATGAGACCCAAGTGAAGGATATAGTTCTCAAACTCAGCTACGACAACTTGCCAAGGAGACTAAAACCATGTTTTCTCTATCTTGGATTATTTCCTGAAGACTTTGAAATACCTGTTACGCCATTATTGCAAAAATGGGTTGCTGAGGGTTTTATACAAGATACAGGAAATAGAGACCCAGATGATGTTGCGGAAGACTACTTGTACGAGCTCATCGATCGCAGTTTGGTCCAGGTAGCAAGAATGGATTTTAATAGAGGTTTGGAGACATGTAAGGTTCATGATCTTCTTCGAGATCTTTGCATATCAGAGAGCAAAGAGGACAAAGTGTTTGAAGTTTGCACAAACAATAACATTCTACTCCCTACCAAACCTCGTAGACTGTCCATTCACGTAGACATGGGTCACTACATTTCTTCAAGCAGTAATGACCATTCATGTATTCGTTCCCTGTTTTTCTTTGGGCCACATTATAAGGTTCGTGGCAGAGAGTGGAAATGGCTTTTGGACGACTTCAAATTGATTCGAGTGTTAGAGTTTGGACCTAACGACCGGAACAAGATCCCTTCCAACTTAGGGAACTTCATCCACTTAAGGTACTTGAAAATATTATCTAGTTATGATACATTTGTTCCAGATTCGATACTTAACCTTTGGAATCTACAAACCTTAGACCTGGGTAGTTGGGACCATCTCATGCCAGTGTCTTTCCCTGGTCAAATTTGGAAACTGAAACATTTAAGGCACTTGTATACACAAGGGCCTATCAAGTTGCGAGGAAGATGTTCAGAACCAGATGAGAAGATGTGGAATCTTCAAACCATCTCTCTTGTATCAAATACGCAAGCAATATCTCTAATAAAGAAAGGAATATTCCCCAATATTAAGAGGTTGAGGTTGAGGGAGGAACATGGTTTCGTAGGTGAATTACCCAATTTATTAGAGAACCTACAACAATTAAATCATTTGAATAAATTACTGATTTTGTCCCCTTTCCGGCAGGGTTACAAGCTACAAGAACGGGTTCAAAGCCTAGGACAATTAAGTTGTTTAACTATCTTAATAATTAGTGATGTTGTAGATCTTTTAACCTCTATGCTCATATTACCCCCAAACATTACAGAGTTAACATTGTCACAGATTAACTGGATTACTGATGAGGGGATGAATAGTCTCGCAAATCACTCCAAACTCAAAGTTTTGAGACTTCGGGGAACAGGGTTGTTTCAGGAGGATTCCTTTGACCTCAATTGTGCCGATGGTGGCTTCCCACAACTTGAAGTGTTTAAAATGAGAGATATAAAACTTCGAAAGTGGAGATTAGGCAATTGTGCGATGCAGAAGCTTCAAAATGTGTTTATCCAGAGATGTCAACCATTAGATCATCTCCCAACTGAACTTTGTTCTTTGAATGAATTGAGAGAAGTACATATAACGGAAGATCCCTCAAAACAAATGACTCACATCTTAGAAATTTTGAAAACAAATAATGGAGTTCGAGTCATTATAGGAGTTTTTCCAACTCCAGATGTTGAGTGGGATCATGTTAGTAGAGTGACGTATGAGATTTATTATTCAAAATAG	2793	0.4178	MAESVVTFVLDHLAQLASREANLLCGVEDRVQSLQYELQMIKELLNTTKRKKGMEHTVLNQIRDVAHLAEDVIDTFVAKVSIYKRRTILGRMLRGFGQERLLHHVAHKIDKLKTTLNEIRDNKDKYDAFKETTDQSAVEEEEKERLQLLHKLRRDVEEENVVGFVHDSKDVVKRLLGGGSNREVVSVVGMGGLGKTTLARKVYNSSQVMSHFDCHAWVYVSNECRVHDLLIDLHKHLMPDFEQQRRGNKRGNKSAGDIKDLSKEELKKHVWNYLERKRYLVVVDDLWKRQDWDDVQDAFPDNNRGSRILITSRLKEVALHAGDDDPHHLQFLSEKESWKLFCRKAFRGKNCPSDLEPLGKQMVQSCRGLPLSIVVLAGLLAKKEKSDREWSKVVGHVNWYLTRDETQVKDIVLKLSYDNLPRRLKPCFLYLGLFPEDFEIPVTPLLQKWVAEGFIQDTGNRDPDDVAEDYLYELIDRSLVQVARMDFNRGLETCKVHDLLRDLCISESKEDKVFEVCTNNNILLPTKPRRLSIHVDMGHYISSSSNDHSCIRSLFFFGPHYKVRGREWKWLLDDFKLIRVLEFGPNDRNKIPSNLGNFIHLRYLKILSSYDTFVPDSILNLWNLQTLDLGSWDHLMPVSFPGQIWKLKHLRHLYTQGPIKLRGRCSEPDEKMWNLQTISLVSNTQAISLIKKGIFPNIKRLRLREEHGFVGELPNLLENLQQLNHLNKLLILSPFRQGYKLQERVQSLGQLSCLTILIISDVVDLLTSMLILPPNITELTLSQINWITDEGMNSLANHSKLKVLRLRGTGLFQEDSFDLNCADGGFPQLEVFKMRDIKLRKWRLGNCAMQKLQNVFIQRCQPLDHLPTELCSLNELREVHITEDPSKQMTHILEILKTNNGVRVIIGVFPTPDVEWDHVSRVTYEIYYSK	930

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2911g00004	930	CDD	RX-CC_like	2	121	IPR038005	-
	Vium2911g00004	930	SUPERFAMILY	L domain-like	495	886	-	-
	Vium2911g00004	930	Gene3D	Ribonuclease Inhibitor	518	904	IPR032675	-
	Vium2911g00004	930	PRINTS	Disease resistance protein signature	619	635	-	-
	Vium2911g00004	930	PRINTS	Disease resistance protein signature	184	199	-	-
	Vium2911g00004	930	PRINTS	Disease resistance protein signature	273	287	-	-
	Vium2911g00004	930	PRINTS	Disease resistance protein signature	366	380	-	-
	Vium2911g00004	930	PANTHER	DISEASE RESISTANCE PROTEIN RP	32	849	IPR044974	GO:0006952
	Vium2911g00004	930	FunFam	Probable disease resistance protein At1g61300	143	326	-	-
	Vium2911g00004	930	Gene3D	-	331	416	IPR042197	-
	Vium2911g00004	930	Pfam	NB-ARC domain	170	419	IPR002182	GO:0043531
	Vium2911g00004	930	FunFam	Probable disease resistance protein At5g66910	331	418	-	-
	Vium2911g00004	930	Gene3D	-	417	507	IPR036388	-
	Vium2911g00004	930	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	147	431	IPR027417	-
	Vium2911g00004	930	Coils	Coil	139	159	-	-
	Vium2911g00004	930	Gene3D	-	5	98	-	-
	Vium2911g00004	930	Pfam	Rx N-terminal domain	5	81	IPR041118	-
	Vium2911g00004	930	FunFam	Probable disease resistance protein At1g63360	417	506	-	-
	Vium2911g00004	930	Gene3D	-	144	324	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2911g00004	Vium-Chr2911	27295	30302	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2911g00004	185	756	WRKY Transcription Factor Family	AT5G45050	24.311	8.06e-11	64.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2911g00004	-		-	vra:106779070	1639.4