Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2911g00003 ATGGCTGATTCCACTCCGACCGCAACTCCTTCAAACGACAACGAATCATGCGTTTACCAACGAACGGTCACTTTATATGATTGGTGGTTGATTAAAGCCACAAACGACTTCCAAGGAAAGCGTTTAGCTGTTGCAGGCGTCTCATCGAGAAAGGATGAGGCCATGCGCGTGTTTGTTTCTGCTCCCGTTATCAAAAGATACGACATGTTTTCTCTCAAGACTGCGGATGGGATATACCTTTTAATGAGTGGTTTCATCAACGAGCAGCGCAGTGTTGAAAACGGTTTCGACCCTCAGGTTTTGGACCGATTTTTATTTGGCTTCCCTCCGGACTGGGAAAGCCATGCTCTAGATTTCTCCAAAGAAGAATCAACCACGGGGAATGATTTGGGTAGTGCTTGTCTTGATGACGTACCGGCTAGCTGTCCAGAAATTTTATCTGATGGTGTGGAAAATTGCATTCCTACTTTTTCTGCATCACCGGAAAAGGCGCAGGGTGATCGGGAAAAGGCATTCCCTGAAAATGAATGCAACGTGTCAAAGGAGGTGGCTGGTGTTAAGGTTACTTCTAGTAGAGGTAGGGAAAGACGAAGTGCCAAGTTGCATGATGTTGAAGTATACCAGCGGAAGAAACCGTCTTCTTCTGGATTGCCTCCGAAGAATCCAAATAATAAGAACCATATTTCAGTGGCGGCCTTAGATAATTGTGATGAAGTGGGACCAAAAAGTCCGGAAACACCTATTCAGTCACAACCATGGAGACAACTACGCACATCATCTGAACAGATAGTACAAAAATCTGCCTCCATAATTTCTAGAACATTGTCACCAAAGACCGAAGGCTGTCATAAGAAAAAAGTCGTCAGGCCTAAGGGACGGAATAAATCTGCTTCTGCTGGGAAAAGTTCGCGATTAAAAGATCCAAGTCACTTGACCAAGGGAAGCGGACAGAAAAAATCAACTACTTCTCCTGAGTCATCGAGTTTCAGAACATCCAGATCTGGCAGATTGCTTGTACCTCCCTTAGAATTTTGGCGCAATCAAATACCAATATATGATGCGGATCATGTGCTCAAAGAAATTAAGGATGGTGCATCTTTGATATCACCTTGTAGGGTTTCTTCATCATCATCGAGCAGGAAGGACTGA 1149 0.443 MADSTPTATPSNDNESCVYQRTVTLYDWWLIKATNDFQGKRLAVAGVSSRKDEAMRVFVSAPVIKRYDMFSLKTADGIYLLMSGFINEQRSVENGFDPQVLDRFLFGFPPDWESHALDFSKEESTTGNDLGSACLDDVPASCPEILSDGVENCIPTFSASPEKAQGDREKAFPENECNVSKEVAGVKVTSSRGRERRSAKLHDVEVYQRKKPSSSGLPPKNPNNKNHISVAALDNCDEVGPKSPETPIQSQPWRQLRTSSEQIVQKSASIISRTLSPKTEGCHKKKVVRPKGRNKSASAGKSSRLKDPSHLTKGSGQKKSTTSPESSSFRTSRSGRLLVPPLEFWRNQIPIYDADHVLKEIKDGASLISPCRVSSSSSSRKD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2911g00003 382 MobiDBLite consensus disorder prediction 244 276 - -
Vium2911g00003 382 MobiDBLite consensus disorder prediction 214 230 - -
Vium2911g00003 382 MobiDBLite consensus disorder prediction 188 209 - -
Vium2911g00003 382 Pfam SANTA (SANT Associated) 23 114 IPR015216 -
Vium2911g00003 382 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 3 364 - -
Vium2911g00003 382 MobiDBLite consensus disorder prediction 314 334 - -
Vium2911g00003 382 MobiDBLite consensus disorder prediction 188 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2911g00003 Vium-Chr2911 15008 18474 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium2911g00003 SANTA 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2911g00003 - - vun:114170070 597.43