Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2911g00002 ATGGCTGATTCCACTCCGACCGCAACTCCTTCAAACGACAACGAATCATGCGTTTACCAACGAACGGTCACTTTATATGATTGGTGGTTGATTAAAGCCACAAACGACTTCCAAGGAAAGCGTTTAGCTGTTGCAGGCGTCTCATCGAGAAAGGATGAGGCCATGCGCGTGTTTGTTTCTGCTCCCGTTATCAAAAGATACGACATGTTTTCTCTCAAGACTGCGGATGGGATATACCTTTTAATGAGTGGTTTCATCAACGAGCAGCGCAGTGTTGAAAACGGTTTCGACCCTCAGGTTTTGGACCGATTTTTATTTGGCTTCCCTCCGGACTGGGAAAGCCATGCTCTAGATTTCTCCAAAGAAGAATCAACCACGGGGAATGATTTGGGTAGTGCTTGTCTTGATGACGTACCGGCTAGCTGTCCAGAAATTTTATCTGATGTTGCTATCGCAGGTGTGGAAAATTGCATTCCTACTTTTTCTGCATCACCGGAAAAGGCGCAGGGTGATCGGGAAAAGGCATTCCCTGAAAATGAATGCAACGTGTCAAAGGAGGTGGCTGGTGTTAAGGTTACTTCTAGTAGAGGTAGGGAAAGACGAAGTGCCAAGTTGCATGATGTTGAAGTATACCAGCGGAAGAAACCGTCTTCTTCTGGATTGCCTCCGAAGAATCCAAATAATAAGAACCATATTTCAGTGGCGGCCTTAGATAATTGTGATGAAGTGGGACCAAAAAGTCCGGAAACACCTATTCAGTCACAACCATGGAGACAACTACGCACATCATCTGAACAGATAGTACAAAAATCTGCCTCCATAATTTCTAGAACATTGTCACCAAAGACCGAAGGCTGTCATAAGAAAAAAGTCGTCAGGCCTAAGGGACGGAATAAATCTGCTTCTGCTGGGAAAAGTTCGCGATTAAAAGATCCAAGTCACTTGACCAAGGGAAGCGGACAGAAAAAATCAACTACTTCTCCTGAGTCATCGAGTTTCAGAACATCCAGATCTGGCAGATTGCTTGTACCTCCCTTAGAATTTTGGCGCAATCAAATACCAATATATGATGCGGATCATGTGCTCAAAGAAATTAAGGATGGTGCATCTTTGATATCACCTTGTAGGGTTTCTTCATCATCATCGAGCAGGAAGGACTGA 1161 0.4436 MADSTPTATPSNDNESCVYQRTVTLYDWWLIKATNDFQGKRLAVAGVSSRKDEAMRVFVSAPVIKRYDMFSLKTADGIYLLMSGFINEQRSVENGFDPQVLDRFLFGFPPDWESHALDFSKEESTTGNDLGSACLDDVPASCPEILSDVAIAGVENCIPTFSASPEKAQGDREKAFPENECNVSKEVAGVKVTSSRGRERRSAKLHDVEVYQRKKPSSSGLPPKNPNNKNHISVAALDNCDEVGPKSPETPIQSQPWRQLRTSSEQIVQKSASIISRTLSPKTEGCHKKKVVRPKGRNKSASAGKSSRLKDPSHLTKGSGQKKSTTSPESSSFRTSRSGRLLVPPLEFWRNQIPIYDADHVLKEIKDGASLISPCRVSSSSSSRKD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2911g00002 386 MobiDBLite consensus disorder prediction 248 280 - -
Vium2911g00002 386 MobiDBLite consensus disorder prediction 218 234 - -
Vium2911g00002 386 Pfam SANTA (SANT Associated) 23 114 IPR015216 -
Vium2911g00002 386 MobiDBLite consensus disorder prediction 192 213 - -
Vium2911g00002 386 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 175 368 - -
Vium2911g00002 386 MobiDBLite consensus disorder prediction 318 338 - -
Vium2911g00002 386 MobiDBLite consensus disorder prediction 192 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2911g00002 Vium-Chr2911 15008 18474 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium2911g00002 SANTA 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2911g00002 - - vun:114170070 609.372