Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2911g00001 ATGCTACTATTGATTTTTGGAACACTCAGGAAGACATTAATCTGTTGCGCTGAATCTTTTCTCTGCTTTTTTGTTGGGGTTGGTTTCTTCTATCTATCTATCTATCTATCATCTTCTTCTGGTTCATTTCCATCTCCATCTCCATCTCCACTCCCACTTCACTCCCTTTGGTTCCTTCTTCGGTTCAGATATTCCAAAAGGGTAGACACAAACGCAATTCATATGGGGTATCTATACCTTTCTTGCAGAGCCGAATCCGCAGTTTCAACTTCCGATTCGGTGGCTTCTTCCAAAGCTACCGGAGAGAAAGATAAAGAGAAAGAGAGAAGCGGCATCAAGATCCAGGAGTTTCAGTACAGGGACCTCGAGGCTGCTACCAATGGCTTCTCCGACCGCAAGCTTCTCGGCAAAGGGAGTCACGGTTATGTCTACAAGGCGGTGGTTCGGGGCCGTCCCGTGGCGGTGAAGCGGCCGTCGCGTCCGCATCATCACGGGGTTGTTCCTCGGCCGGTGTCTTCTTCCGCGCCTCTGGAGATCACGAACGAGGTGGACAATGAGATCGACATCTTGTCGAAAATCCAGAGCCCCAGGTTGGTGAATTTGGTGGGTTTCACGAACGATTCAAGAGACAGGCTTTTGGTGGTGGAGTTCATGAGCAATGGCACCCTTTACGATGTTCTTCATTCCTCTCCGAGGCCTCCCAATTGGGGTAGGAGGATTCGTTTGGCTCTGCAAACTGCTAAAGCCATTGACACGCTTCACTCCTCGACCCCTCCTGTGATTCACCGTGACATAAAGTCTGCGAACGTTCTCATCGACCGCAGCTACAATGCGAGATTGGGGGATTTTGGTTTGGCTTTGAGAGGCCATGTTGATGACTACAGACTCAGGTCCACTCCCCCTGCAGGCACCATGGGCTATCTTGACCCTTGTTATGTAACTCCTGATAATCTGAGCACCAAAACTGATGTTTTCAGCTTTGGGATTTTGCTGCTGGAGATTATAAGCGGAAGGAAGGCCATTGACATCACTTATTCACCACCTTCTATCGTGGATTGGGCCATTCCTCTCATCAAGAAAGGGAAGCTTTTGGCTGTTTATGATCCCAGAATTGCACCTCCCAAGGATCCGGTTGTGAGGAAGCAGTTGGCTGTGATTGCTGCCAAGTGTGTGAGGTCTTGCAGGGAGAGGAGACCTTCCATGAAGGAGGTTGTTACTTGGCTCTGTGGGCTGTGTAAACTGGTGCCTCTTCATTCTTGGAATGGTTTTAACAACCCTTGCATGATGGTTGAGACTGTGGGGCGCCCTGTTGAAGCAAGAAATGGTGAATTCAATTCTAGGCTGGCAGGTGTGGAAGAGGGAAATATTGAAGCTTTGGATGGAAGACTTTCCAAGTCTGCAATGAGGTATTCCAGGAGGGTGTATTCTGATTTGGGGTTCAGCAGCAACTTGATGGACTTGATGGCTACCACTGAGGAGCCTGAATTTCTGAGAGATGCTGATGGGATGGATCATAGTTCTAAATCTGCTGAACAAGTTTCTAGCTCCAGGTTTGGCAGTGGAAGGTATTCCATAAGAGGGAGGAACCTATACAGGCCATGTGGCAGTGACAAGGACGCCTTTGGCTTCAGTAAAGGTCGGATTGTAGGTCAGACTGAGACCACTTCAAAACAGGACGAGGTTTCTGGTTCAAATTCGAAGAATTTGAATTCTCTGGTTGCTGAGGTTGTCTAG 1734 0.4856 MLLLIFGTLRKTLICCAESFLCFFVGVGFFYLSIYLSSSSGSFPSPSPSPLPLHSLWFLLRFRYSKRVDTNAIHMGYLYLSCRAESAVSTSDSVASSKATGEKDKEKERSGIKIQEFQYRDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRPHHHGVVPRPVSSSAPLEITNEVDNEIDILSKIQSPRLVNLVGFTNDSRDRLLVVEFMSNGTLYDVLHSSPRPPNWGRRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRSYNARLGDFGLALRGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPVVRKQLAVIAAKCVRSCRERRPSMKEVVTWLCGLCKLVPLHSWNGFNNPCMMVETVGRPVEARNGEFNSRLAGVEEGNIEALDGRLSKSAMRYSRRVYSDLGFSSNLMDLMATTEEPEFLRDADGMDHSSKSAEQVSSSRFGSGRYSIRGRNLYRPCGSDKDAFGFSKGRIVGQTETTSKQDEVSGSNSKNLNSLVAEVV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2911g00001 577 ProSitePatterns Protein kinases ATP-binding region signature. 135 156 IPR017441 GO:0005524
Vium2911g00001 577 Gene3D Transferase(Phosphotransferase) domain 1 218 415 - -
Vium2911g00001 577 Pfam Protein kinase domain 130 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2911g00001 577 SUPERFAMILY Protein kinase-like (PK-like) 112 408 IPR011009 -
Vium2911g00001 577 FunFam Serine/threonine-protein kinase-like protein 218 421 - -
Vium2911g00001 577 SMART serkin_6 129 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2911g00001 577 Gene3D Phosphorylase Kinase; domain 1 99 217 - -
Vium2911g00001 577 PANTHER OS01G0253100 PROTEIN 92 410 - -
Vium2911g00001 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Vium2911g00001 577 ProSiteProfiles Protein kinase domain profile. 129 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2911g00001 Vium-Chr2911 5001 8054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2911g00001 70 408 Receptor kinase-like Gene Family AT3G59420 41.477 6.10e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vium2911g00001 Pkinase 1.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2911g00001 - - vum:124832395 1090.49