Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2910g00003 ATGAACGTTGAGGCAGTAGATGAAGGGGAAAACAGTGATAGACCTGCTTCTGGAAATGTTGAAACTGAAAAAGATGAGGAACAAAATATGAAAGTAAACTTGGCTGAAAGAGAAGTAAATAACCAAGATGGTGATGCTTATAGGAAGCCACTTGTGGGCATGCTGTTTGAATCTGAAGATTTTGCAAAATCATTTTATGATGCATATGCAAGAGATGTAGGATTTAGCACACATGTTGGTCAATTCAGCCGTGCTAAGCCTGATGGTCCAATTATAACTTGGGACTTTGCTTGTTCCAGAGAGGTATTTAAAAGGAAGAACATAGTAAGTTGCAATGCAATGCTTAGGGTAGAGAGAAAAGATGCAAACTGGATAGTGACAAAATTTGTTGAGGACCATAACCATTCCCTTGCTTCCTCTAGAAAGGTGCAGAACCGTCAACCCAGTAGACATTCTGTAGGTGCTGCTAGGAATGTTATAGTGACATTTGATGCCCGTAATGAGTCTTGTGCTTCCTTGAATGGAAATCATTCAGAGCCCATTAGTTCTGTTAGTAACTCTTTTCCAGCAGAACAATGTCATCCAATGAGAAACATTGGCTCACTTACCTATGCAAGATCTTCTCAAAAGAGGACCCTTGGAAGAGATGCTCAAAATCTTCTGAATTATTTTAAGAAGATGCAGGGTGAAAACCCTGGCTTCTATTATGCAATACAACTAGATGATGAAAACCGTATGACCAATGCATTCTGGGCGGATGCAAGGTCAAGAACAGCTTATAATTACTTTGGTGATGCTGTAATCTTTGACACGATGTATAGACCAAATCAATACCAAATCCCATTTGCTCCATTTACCGGATTCAATCACCACGGCCAAATGGTTTTATTTGGTTGTTCATTACTTCTAGACGAATCGGAGTCTTCCTTTACATGGCTATTCAAGACGTGGCTATCTGCTATGAATGATCGACCACCTGTTTCCATAACCACAGACCAAGATAGAGCCATACAAGCAGCAGTTTCTCACGTGTTCCCGGAAACTCGCCACTGTATTTGTAAGTGGCACATTTTAAGAGAAGGTCAAGAAAGATTGGCTCATATTTACCTTGCTCATCCTTCACTCTATGGAGATCTATATGGCTGTATCAATTTTTCTGAGACTACTGAGGATTTTGAATCAACATGGAAGTCTCTTCTGGATAAATATGATCTCCAGAAAAATGATTGGCTTCAGGCAGTATATAATGCTCGTAAACAATGGGCCCCTGTTTACTTTCGTGATACTTTCTTTGCTGCTATTACTTCAAACCACGGGGTAAACTCCTTTTTTGATGGCTATGTAAATCAACAGACAACCATACCTTTATTCTTTAGGCAGTATGAAATATCACTTGAACATTCATTGGAAAAAGAAATAGAAGCAGATTATGAGACTATTTGTAACACGCCTGTACTGAGGACTCCATCACCAATGGAACAACAGGCAGCAAATATGTACACTAACAAGATTTTTGCAAAGTTTCAGGAGGAACTGGTGGAAACTTTTGCATATACTGCAAGTAATGTTGACAATGATGGTGTTATCAGTAAATACAGGGTTGCAAAATATGAACATGATCACAAGGCATACATGGTCACATTAAATATGTCTGAAATGAAGGCAAACTGCAGCTGTCAGATGTTTGAATACTCTGGCATTCTTTGTCGACATGTATTGACTGTTTTCACTGTAACAAATGTCCTTACCCTTCCATCACACTACATTTTAAAGCGATGGACAAGGAATGCAAAATCTGGTTTTGGAACTGATGAAAAAACAACAGGTCCACTTAACATTGAAAATCTCACTATACGTTTTAATAGTTTATGTCAAGAAGCCATTAAGCTTGCTGAAGAAGGGGCAATTTCCGTTGAGACTTATAATGTAGCAATGAATGCTTTGAGAGAGGGTGCTAAAAGGGTAGGTATTATGAAGAAAAATATTGCAAAAGTCAAACCTAGAAACACTCAGGGTAATGGATGCTGTCCAGAAGACAATAGCAAGAAGAGCCCGTCATCAATTTCGGATGTCATCCCATCACTGTGGCCTTGGCAAGATTCAGTGTCAAATCACTTGAATCATAGTGGCCTTGGGCTTCCTGTTACTGATCTGAATCATCCTACTATGGCTCCTGTTTCTATTCACCAGGATGGTGGCCCTCCAGATAACTCTGTTGTCCTCATGTGTTTCAAGTCTATGACTTGGATCATCGAAAATAAGAATTCAAGCCAATCTAGTAAAATTGCAGTCATCAACATGAAGCTGCAAGATTATGGTAAGAGCCCTATAGTAGAGACAGAAGTGCAATTCAGGGTGACAAGGGTAACTTTGGAGCCTATGTTGAGATCAATGACTTACATTAGTCAACAGTTAAATGCACCAGTCAATAGAGTTGCTGTCATCAATCTGAGGTTCTACATCATCCAGCTCCAGGATACGAAGACAACTACTGGGCAAACTGAGGTGAAATTCCAAGTTTCTAGAGATACTCTCGGCTCCATGCTGAGATCTATGGCCTACATCCGGGAGCAGCTCTAG 2580 0.3984 MNVEAVDEGENSDRPASGNVETEKDEEQNMKVNLAEREVNNQDGDAYRKPLVGMLFESEDFAKSFYDAYARDVGFSTHVGQFSRAKPDGPIITWDFACSREVFKRKNIVSCNAMLRVERKDANWIVTKFVEDHNHSLASSRKVQNRQPSRHSVGAARNVIVTFDARNESCASLNGNHSEPISSVSNSFPAEQCHPMRNIGSLTYARSSQKRTLGRDAQNLLNYFKKMQGENPGFYYAIQLDDENRMTNAFWADARSRTAYNYFGDAVIFDTMYRPNQYQIPFAPFTGFNHHGQMVLFGCSLLLDESESSFTWLFKTWLSAMNDRPPVSITTDQDRAIQAAVSHVFPETRHCICKWHILREGQERLAHIYLAHPSLYGDLYGCINFSETTEDFESTWKSLLDKYDLQKNDWLQAVYNARKQWAPVYFRDTFFAAITSNHGVNSFFDGYVNQQTTIPLFFRQYEISLEHSLEKEIEADYETICNTPVLRTPSPMEQQAANMYTNKIFAKFQEELVETFAYTASNVDNDGVISKYRVAKYEHDHKAYMVTLNMSEMKANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSGFGTDEKTTGPLNIENLTIRFNSLCQEAIKLAEEGAISVETYNVAMNALREGAKRVGIMKKNIAKVKPRNTQGNGCCPEDNSKKSPSSISDVIPSLWPWQDSVSNHLNHSGLGLPVTDLNHPTMAPVSIHQDGGPPDNSVVLMCFKSMTWIIENKNSSQSSKIAVINMKLQDYGKSPIVETEVQFRVTRVTLEPMLRSMTYISQQLNAPVNRVAVINLRFYIIQLQDTKTTTGQTEVKFQVSRDTLGSMLRSMAYIREQL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2910g00003 859 ProSiteProfiles Zinc finger SWIM-type profile. 544 580 IPR007527 GO:0008270
Vium2910g00003 859 Pfam MULE transposase domain 267 359 IPR018289 -
Vium2910g00003 859 MobiDBLite consensus disorder prediction 673 687 - -
Vium2910g00003 859 SMART 26again6 555 582 IPR006564 GO:0008270
Vium2910g00003 859 MobiDBLite consensus disorder prediction 1 29 - -
Vium2910g00003 859 MobiDBLite consensus disorder prediction 668 687 - -
Vium2910g00003 859 Pfam FAR1 DNA-binding domain 64 138 IPR004330 -
Vium2910g00003 859 Pfam SWIM zinc finger 546 578 IPR007527 GO:0008270
Vium2910g00003 859 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 655 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2910g00003 Vium-Chr2910 2658 10474 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium2910g00003 MULE 6.8e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2910g00003 - - gmx:100789242 1547.72