Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2907g00002 ATGGGAAACTGCGGAACCAGAGAGGAATCTGCCGTAGTTTCCAACGCGCAAGTTCAGCAGCTTCACCATGCGGCGTCCTTGGGCGCCAGTGCGAGGAGTCATAATGCCGGTAGCGAGAAGAAGCACGGTCACGGTCACTGTCACAGACACAATCTGAGTGAGTGCGCTTCGGATCTGAGCGAAGCTTGTTCGACACCGCGAGGTAACAATAGCAACAACACGCACGTGATATCGTTCACGCTCTACGAGTTGGAGTTCATAACTAAGAGCTTCCGCGGAGACTACATCCTCGGCGAGGGAGGGTTCGGCACCGTTTACAAAGGCTACATTGATGAGAACGTCAGATTGGGACTCAAATCGCTTCCTGTGGCGGTTAAGGTTCTGAACAAGGAAGGATTACAAGGACATCGAGAGTGGCTTACGGAGGTGAATTTTCTAGGGCAGCTAAGGCATCCTAATCTGGTGAAGTTGATTGGGTACTGTTGTGAAGATGATCATAGGCTGCTTGTGTACGAGTTCATGTTCCGAGGGAGTTTGGAAAATCATTTATTCCGAAAGGCAACTGTCCCTTTATCATGGGCTACAAGAATGATGATTGCTTTTGGAGCTGCAAAAGGACTTGCATTTCTCCACAATGCTGAAAGGCCGGTTATCTACCGTGACTTCAAAACGTCTAATATATTGTTGGACTCGGATTATACAGCAAAGCTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAAGGTGACGAAACCCATGTATCCACTCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTAATGACTGGCCACCTGACGGCTAGGAGTGATGTCTATAGTTTTGGTGTTGTTCTTTTGGAACTCTTAACGGGGAGGAAATCAGTGGACAAGACCAGACCTGGCAAGGAACAGAGCTTGGTAGATTGGGCAAGGCCAAAGCTAAATGACAAGAGAAAGCTACTACAGATAATTGATCCTAGATTGGAGAATCAATACTCAGTGAGGGCTGCACAAAAAGCGTGTAGCTTGGCTTATTACTGTTTAAGTCAAAATCCCAAAGCGAGGCCCCTAATGAGCGATGTAGTCGAGACATTAGAACCCTTACAAAGTTCCAGTGTTGGTGCAGGTGAAGTCTCATTATCTGGATCAAATAGTGTGACTGCTGGGCCTTTTGCCATGAACAAAATCTCGGACTACCGTATGCGTCAAAGGTTCTCAAACAATGTTGGTCCTGGTTCTGCGTGTCGATCTCCAAACCCAAATTGTTCACCAGGTGCCCCAGCAGCACTACGAGTGAGATGA 1311 0.4744 MGNCGTREESAVVSNAQVQQLHHAASLGASARSHNAGSEKKHGHGHCHRHNLSECASDLSEACSTPRGNNSNNTHVISFTLYELEFITKSFRGDYILGEGGFGTVYKGYIDENVRLGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIAFGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGAGEVSLSGSNSVTAGPFAMNKISDYRMRQRFSNNVGPGSACRSPNPNCSPGAPAALRVR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2907g00002 436 Gene3D Transferase(Phosphotransferase) domain 1 174 381 - -
Vium2907g00002 436 Pfam Protein tyrosine and serine/threonine kinase 96 368 IPR001245 GO:0004672|GO:0006468
Vium2907g00002 436 FunFam Serine/threonine-protein kinase BIK1 59 173 - -
Vium2907g00002 436 ProSiteProfiles Protein kinase domain profile. 91 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2907g00002 436 MobiDBLite consensus disorder prediction 413 436 - -
Vium2907g00002 436 CDD STKc_IRAK 97 371 - -
Vium2907g00002 436 ProSitePatterns Protein kinases ATP-binding region signature. 97 126 IPR017441 GO:0005524
Vium2907g00002 436 PANTHER OS01G0588500 PROTEIN-RELATED 54 372 - -
Vium2907g00002 436 Gene3D Phosphorylase Kinase; domain 1 69 173 - -
Vium2907g00002 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vium2907g00002 436 FunFam Probable serine/threonine-protein kinase PBL8 174 386 - -
Vium2907g00002 436 SUPERFAMILY Protein kinase-like (PK-like) 71 369 IPR011009 -
Vium2907g00002 436 MobiDBLite consensus disorder prediction 24 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2907g00002 Vium-Chr2907 15596 19245 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2907g00002 71 381 Glycoside Hydrolase AT3G07070 52.229 7.17e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium2907g00002 PK_Tyr_Ser-Thr 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2907g00002 - - gmx:102662348 840.106