Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2904g00009 ATGGATGGTAACGATGCTTTTTGCTACCCATATCATATTGATGATTGCATGACTCTAGAGAAATGGCCCAAGGGGCCTCAGGATTCAGAAATGCTTCCCAGAAGAAAGGGAACTGGTTCAACATCAGAGAAACCACTTGATGCAAAGACACTAAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAATCAAGTAGATTAAAGCTTACCCAGATAGAACAAGAACTCCAAAGAGCACGCTCTCAGGGCTTGTTCGTGGATTGTGGTGGTGTTGGAAGCAATGTAAGCTCTGCGGGAGCCGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGACCACAGGCTAATGGGGGAGCTTCGGAACGGGTTGCAAGTACCCTTATCAGAGAGTGATATGAGAGTGATGGTGGATGGATATCTCTCCCACTATGATGAGATTTTCAGGCTCAAGGGTGTGGCTGCTAAATCAGATGTGTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGCTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGCTGATACAACAATTGGAGCCACTAGCTGAGCAACAGATAATGGGGATGTATGGCCTGAGACATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGCCTTGAACAGTTGCAGCAATCTCTGGTGGACACCATTGCTGGAGGCCCGGTTGTTGATGGTGTGCAACAAATGGTCGTTGCCATGAGCAAACTAGCCAATCTTGAAGGATTTGTTCGTCAGGCTGATAATTTGAGGCAACAAACACTTCATCAGTTATGTCGATTACTCACAGTTCGTCAAGCAGCACGATGCTTCATTGTCATTGGAGAATACTATGGACGTCTTCGAGCCCTTAGTTCTCTCTGGGCATCAAGACCACGAGAGACCTTGATCGGTGATGATAACTCATGCCAAACAACAACAGAAATGCAAGTGGTCCAACATTCTCAGAATCATTTCTCGAGTTTCTGA 1059 0.4608 MDGNDAFCYPYHIDDCMTLEKWPKGPQDSEMLPRRKGTGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQIEQELQRARSQGLFVDCGGVGSNVSSAGAAMFDMEYGRWLEEDHRLMGELRNGLQVPLSESDMRVMVDGYLSHYDEIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLIGDDNSCQTTTEMQVVQHSQNHFSSF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2904g00009 352 MobiDBLite consensus disorder prediction 24 47 - -
Vium2904g00009 352 Gene3D - 48 97 - -
Vium2904g00009 352 FunFam BZIP family transcription factor 48 97 - -
Vium2904g00009 352 SMART brlzneu 45 110 IPR004827 GO:0003700|GO:0006355
Vium2904g00009 352 PANTHER TRANSCRIPTION FACTOR TGA9 39 324 - -
Vium2904g00009 352 Coils Coil 68 95 - -
Vium2904g00009 352 Pfam bZIP transcription factor 48 84 IPR004827 GO:0003700|GO:0006355
Vium2904g00009 352 SUPERFAMILY Leucine zipper domain 49 92 IPR046347 GO:0003700|GO:0006355
Vium2904g00009 352 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 52 67 IPR004827 GO:0003700|GO:0006355
Vium2904g00009 352 ProSiteProfiles DOG1 domain profile. 113 321 IPR025422 GO:0006351|GO:0043565
Vium2904g00009 352 Pfam Seed dormancy control 131 205 IPR025422 GO:0006351|GO:0043565
Vium2904g00009 352 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 47 91 IPR004827 GO:0003700|GO:0006355
Vium2904g00009 352 CDD bZIP_HBP1b-like 49 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2904g00009 Vium-Chr2904 44200 48950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2904g00009 23 352 bZIP Transcription Factor Family AT1G08320 72.508 9.63e-179 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium2904g00009 DOG1 5.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2904g00009 K14431 - gmx:778123 581.637