Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2904g00008 ATGGCGAGCCACAGAATAGGAGAACTCGGTTTGTCTGAGTCGGGACCTTCAAGTCACCACATCCCTTATGGAGTGCTTCATGGAATAAACACTAATCCAGTATCAAGCTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTCAAGGGTAGAAATGATGATGACAAAGCATCTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAACAAACCCCAAGAGGTGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGTCTTTCCAGCAAAACTGAGCCCCCCTTCGAGGCAGAATCTCCCATGAGTAAAAAGGCATCTTCTTCAGATCACCAGGCTTTTGATCAGCAGCATCTGCAGCACAGGCAGCAGCTTCAACAGGATATGGCAAGTGATGCCGCAAGAACAGCCTCTTCACAGAATCAATCAGCAGCCAAATCACAAGAAAAGAGAAAGGGAACTGGTTCAACATCAGAGAAACCACTTGATGCAAAGACACTAAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAATCAAGTAGATTAAAGCTTACCCAGATAGAACAAGAACTCCAAAGAGCACGCTCTCAGGGCTTGTTCGTGGATTGTGGTGGTGTTGGAAGCAATGTAAGCTCTGCGGGAGCCGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGACCACAGGCTAATGGGGGAGCTTCGGAACGGGTTGCAAGTACCCTTATCAGAGAGTGATATGAGAGTGATGGTGGATGGATATCTCTCCCACTATGATGAGATTTTCAGGCTCAAGGGTGTGGCTGCTAAATCAGATGTGTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGCTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGCTGATACAACAATTGGAGCCACTAGCTGAGCAACAGATAATGGGGATGTATGGCCTGAGACATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGCCTTGAACAGTTGCAGCAATCTCTGGTGGACACCATTGCTGGAGGCCCGGTTGTTGATGGTGTGCAACAAATGGTCGTTGCCATGAGCAAACTAGCCAATCTTGAAGGATTTGTTCGTCAGGCTGATAATTTGAGGCAACAAACACTTCATCAGTTATGTCGATTACTCACAGTTCGTCAAGCAGCACGATGCTTCATTGTCATTGGAGAATACTATGGACGTCTTCGAGCCCTTAGTTCTCTCTGGGCATCAAGACCACGAGAGACCTTGATCGGTGATGATAACTCATGCCAAACAACAACAGAAATGCAAGTGGTCCAACATTCTCAGAATCATTTCTCGAGTTTCTGA 1464 0.4645 MASHRIGELGLSESGPSSHHIPYGVLHGINTNPVSSLINQGSAFDFGELEEAIVLHGVKGRNDDDKASLFTARPAATLEMFPSWPMRFQQTPRGGSKSGGESTDSGLSSKTEPPFEAESPMSKKASSSDHQAFDQQHLQHRQQLQQDMASDAARTASSQNQSAAKSQEKRKGTGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQIEQELQRARSQGLFVDCGGVGSNVSSAGAAMFDMEYGRWLEEDHRLMGELRNGLQVPLSESDMRVMVDGYLSHYDEIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLIGDDNSCQTTTEMQVVQHSQNHFSSF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2904g00008 487 Gene3D - 183 232 - -
Vium2904g00008 487 PANTHER TRANSCRIPTION FACTOR TGA9 114 459 - -
Vium2904g00008 487 SMART brlzneu 180 245 IPR004827 GO:0003700|GO:0006355
Vium2904g00008 487 MobiDBLite consensus disorder prediction 81 186 - -
Vium2904g00008 487 FunFam BZIP family transcription factor 183 232 - -
Vium2904g00008 487 MobiDBLite consensus disorder prediction 89 112 - -
Vium2904g00008 487 MobiDBLite consensus disorder prediction 171 186 - -
Vium2904g00008 487 MobiDBLite consensus disorder prediction 121 170 - -
Vium2904g00008 487 Coils Coil 203 230 - -
Vium2904g00008 487 ProSiteProfiles DOG1 domain profile. 248 456 IPR025422 GO:0006351|GO:0043565
Vium2904g00008 487 Pfam bZIP transcription factor 183 219 IPR004827 GO:0003700|GO:0006355
Vium2904g00008 487 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 187 202 IPR004827 GO:0003700|GO:0006355
Vium2904g00008 487 SUPERFAMILY Leucine zipper domain 184 227 IPR046347 GO:0003700|GO:0006355
Vium2904g00008 487 Pfam Seed dormancy control 266 340 IPR025422 GO:0006351|GO:0043565
Vium2904g00008 487 CDD bZIP_HBP1b-like 184 234 - -
Vium2904g00008 487 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 226 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2904g00008 Vium-Chr2904 44200 51337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2904g00008 166 487 bZIP Transcription Factor Family AT1G08320 73.994 2.33e-179 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium2904g00008 DOG1 9.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2904g00008 K14431 - gmx:100775461 855.129