Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2904g00007 ATGAATTTCCAACAATCAGAGCAAGAGGTGCCACTGCAAGACACGGAAGCATCATTCTATCAACTGAACCAGCAGAGTTCAGAAGTCTCACTCCCCGTTGACGAGGAGGGCAGTGACAAGAACGGAAAGAGCGTAGGGTCCATAAGCATGGTGGATGAATTCATAGCCAGCATTTGGAACACAGATGAATTCCAACTTAACCCTCCTCTACCCGTCTATGATGAAGCTGCAAACAACAACAGCGTTGCACCAGAACCCACCATTCCTCAGCCAGCCTCTTTCTCTGTCCCTCCCCCAATTTGCAAGAAAACTACGGATGAAGTTTGGTCTCAGATCCAGAAAAGCCAACCACAACAAAATGAAGATAATAACAGCCTTGCCAGTGATGAAACACTCCAAAAGGATCCCACATTTGGAGAAATGACTTTGGAGGATTTCCTGATAAAAGCTGGGGTTGTTACTGAATCAACACTGTTCACCACTATATTACCTCAGAATCATTTCGCTAACATTCCAACCAATATTCCATTTAATACAAGCTATATATTAATTGGAACTACTGGACCTAATATGCCCTGTGGTAGATTTGAACCGCATCAAATGCTGCCACAGAATAACCACTTTATTGTGAGGAATTTCACTACTACAAATGTTGCTGTGGAGAATAATTGTCAAAACGTAGCAGAATCAAGTGGCAAGGGTAAGAAAAGGATCATTCAAGGTCCTCCCGAAGTGGTAATAGAGAGAAGGCAGCGCAGAATGCTGAAGAATCGAGAATCAGCAGCACGATCTCGTGCAAGAAGACAGGCATATACTGTGGAGCTTGAAGCAGAGCTGAATAATCTGAAAAATGAGAATGAGAACCTTAAGAATATGCTGGCTGAAGATGAACGCAAGAGGCTAGAAGTAGTAAGTGATTGCCTCAAATTTAACTCAGAGAAAGGCCCCAACAACGGTTCAAAAGAGGAATGA 972 0.4311 MNFQQSEQEVPLQDTEASFYQLNQQSSEVSLPVDEEGSDKNGKSVGSISMVDEFIASIWNTDEFQLNPPLPVYDEAANNNSVAPEPTIPQPASFSVPPPICKKTTDEVWSQIQKSQPQQNEDNNSLASDETLQKDPTFGEMTLEDFLIKAGVVTESTLFTTILPQNHFANIPTNIPFNTSYILIGTTGPNMPCGRFEPHQMLPQNNHFIVRNFTTTNVAVENNCQNVAESSGKGKKRIIQGPPEVVIERRQRRMLKNRESAARSRARRQAYTVELEAELNNLKNENENLKNMLAEDERKRLEVVSDCLKFNSEKGPNNGSKEE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2904g00007 323 Pfam bZIP transcription factor 249 294 IPR004827 GO:0003700|GO:0006355
Vium2904g00007 323 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 247 299 IPR004827 GO:0003700|GO:0006355
Vium2904g00007 323 MobiDBLite consensus disorder prediction 1 32 - -
Vium2904g00007 323 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 24 292 IPR043452 GO:0003700|GO:0045893
Vium2904g00007 323 MobiDBLite consensus disorder prediction 1 45 - -
Vium2904g00007 323 Coils Coil 268 302 - -
Vium2904g00007 323 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 252 267 IPR004827 GO:0003700|GO:0006355
Vium2904g00007 323 Gene3D - 247 301 - -
Vium2904g00007 323 SMART brlzneu 245 309 IPR004827 GO:0003700|GO:0006355
Vium2904g00007 323 MobiDBLite consensus disorder prediction 106 131 - -
Vium2904g00007 323 SUPERFAMILY Leucine zipper domain 249 297 IPR046347 GO:0003700|GO:0006355
Vium2904g00007 323 MobiDBLite consensus disorder prediction 77 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2904g00007 Vium-Chr2904 35596 37913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2904g00007 22 314 bZIP Transcription Factor Family AT3G44460 40.000 1.10e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium2904g00007 bZIP_1 4.6e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2904g00007 K14432 - gmx:100799576 299.286