Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2902g00003 ATGGAGATGCTATCGGTAAGAGAGCAACACGCTCGTACACTGCTAATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTATATGTAGACAAGGGGAAAGCATTTCTCTTTGGTGAGGCTGGTGTTAATGTGGATGAACATCCCGACTCTGACTCATCCGTTCCTTCTACAGTAATGTGCTACATCTGCATGGAGGATGTTGCTAGGGTCGAAACAACAAGAATGGATTGTGGTCATTGCTTTTGCAACTCCTGTTGGATTGAGCATTTTATTGTTAAAATAAATGAGGGTCAAAGTAAACGTATTAGATGCATGCAACACAAGTGCAATTCCATATGTGATGAAGATGTGGTTAGAACTCTACTCAGTAGAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTTAA 420 0.4095 MEMLSVREQHARTLLIYHRWDVEKLFAVYVDKGKAFLFGEAGVNVDEHPDSDSSVPSTVMCYICMEDVARVETTRMDCGHCFCNSCWIEHFIVKINEGQSKRIRCMQHKCNSICDEDVVRTLLSRKHPDMAEKYERFLL 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2902g00003 139 ProSiteProfiles TRIAD supradomain profile. 57 139 IPR044066 -
Vium2902g00003 139 ProSiteProfiles Zinc finger RING-type profile. 61 109 IPR001841 -
Vium2902g00003 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 139 IPR013083 -
Vium2902g00003 139 FunFam RBR-type E3 ubiquitin transferase 56 139 - -
Vium2902g00003 139 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 12 137 IPR031127 GO:0004842|GO:0016567
Vium2902g00003 139 SUPERFAMILY RING/U-box 57 138 - -
Vium2902g00003 139 CDD RING-HC_RBR_TRIAD1 59 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2902g00003 Vium-Chr2902 75997 76768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2902g00003 1 139 ARIADNE family AT2G16090 64.789 1.12e-55 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2902g00003 K11968 - vum:124832373 296.975