Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium28g00001 ATGTCTAGTCATGATCACCATCACCAACATCTTTCTTCCAATCCCTCCGCGCACCTCTCCACTCACTCCGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAGACTCGGTCACGCCTCTGTTCCTGCGACGACACTGATATTAACCCTTTCTCCGGCGCCGTCTGCGACGTCCATCGCACTGAACACGTGCTAGGGTTAGGGTTAGGGTTTGGCGTTGACATTGATTCCCAAACGCGGGATAACGATGATAATAATGGCGATAGAGTTTTCAATTTCGCGTTGGGGGATGGTTCGGGAGGGCTTAGGGTTGTAGCGTTCGGGTCGGATTCGGATGATTCGAGTGGCGGGGAGGGTGGGGTTCGTGATGAGGGTGGTGGGTTTGACGATTTCGATGTTCGGTTTTGTTGGGATAGTCTCTGTTTGGATGATCAGAGGACACTGAATGATGGTTTTGAATGGGAGGAAGTTGAGCAGAGGGTGAATGATAGGGAGGATTCGGGTTTGGTGGCTGATGAGGTTGAAGTTGAAGATGATGGAGATGGTGATTCGGTGGGGTTTACTAATGCCGACGAGGAAGAGGAAGAGGAGGAGGAGGATGGAGGTGAAGAGGCGCTGAGGTACCTTGAGTGGGAGATTCTCTTAGCGGTTAACAATTCGGAGAGGAATGTTAACAATGGTGATGGTTTGGAGCATGAGGGCGTAGCTGGTGCTTCTGATTTGCTGACAATTCGAGATGGTTATGTGTATGCGGCGGAGTATGATGTTCTATTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGAAGTCCTCCCGCCGCGAAGAGTGTTGTGGAGAGTCTTCCATTGGTGGAGTTGTCGAAGGAGGAGCTGTTGCAGGGGAAGAACTTGGCGTGCGCCATTTGCAAGGATGAGATTTTGTTGGAGGAGAAGGTCAGGAGGTTGCCTTGCTCCCACTGTTACCATGGCGATTGCATTTTGCCATGGTTGGAAATTCGCAACACATGCCCAGTTTGTCGGTTTGAGCTGCCCACAGATGATCCGGACTATGAGCAGAGGAAGGTTCACAGGGCTGCTCATGATCTGTTGGAGCTTGCAACGGCAGGGATACAATTTTGA 1134 0.5115 MSSHDHHHQHLSSNPSAHLSTHSDSDSDSVSCFVTDLFETRSRLCSCDDTDINPFSGAVCDVHRTEHVLGLGLGFGVDIDSQTRDNDDNNGDRVFNFALGDGSGGLRVVAFGSDSDDSSGGEGGVRDEGGGFDDFDVRFCWDSLCLDDQRTLNDGFEWEEVEQRVNDREDSGLVADEVEVEDDGDGDSVGFTNADEEEEEEEEDGGEEALRYLEWEILLAVNNSERNVNNGDGLEHEGVAGASDLLTIRDGYVYAAEYDVLFGQFLENESALKGSPPAAKSVVESLPLVELSKEELLQGKNLACAICKDEILLEEKVRRLPCSHCYHGDCILPWLEIRNTCPVCRFELPTDDPDYEQRKVHRAAHDLLELATAGIQF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium28g00001 377 FunFam E3 ubiquitin-protein ligase RING1-like 264 351 - -
Vium28g00001 377 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Vium28g00001 377 MobiDBLite consensus disorder prediction 1 22 - -
Vium28g00001 377 SMART ring_2 304 344 IPR001841 -
Vium28g00001 377 Pfam Ring finger domain 303 345 IPR001841 -
Vium28g00001 377 MobiDBLite consensus disorder prediction 174 207 - -
Vium28g00001 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 187 349 - -
Vium28g00001 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 351 IPR013083 -
Vium28g00001 377 MobiDBLite consensus disorder prediction 162 207 - -
Vium28g00001 377 SUPERFAMILY RING/U-box 291 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium28g00001 Vium-Chr28 18836 20563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium28g00001 215 359 C3H Transcription Factor Family AT3G02340 50.658 3.86e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium28g00001 - - vra:106778727 672.544