Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium289g00004 ATGGCGCACAAGCCTTTCAAATTCAATGAGCATATTCTCGAGCAACTGAGAAATGGGACTGCGAAATTCGAGCTTGTTTCTTCCCCCGCTCCTTCAGTTGCTGCTCCTCCGAACAACATCACAAGCTTGTTTGGAATTGGGAATCGTAGCGCTCTCTTTTTCGCTAGAATTGGCTCTTCCTCTATTGGGCACTCTCCCGCAATGAAGAAACTTGAGCATTTTTCAGTTCAGAAGGTTACAGGGGATGGGCGATGTCTGTTTCGTGCACTGGTCAAAGGAATGGCTTACAACAAGGGAACAGTTCTTAATCAACGTGAGGAGAGAGAAAATGCAGATGAATTAAGAATGGCTGTGAAAGAAGCTGTATGTGAAAATGAGGGTGAACGTAATTTATATGAAGAAGCCCTCATTGCCATCACAGTTGATGAACCTCTAAATCGTTACTGCCAACGGATCGTACGACCTGATTTCTGGGGAGGAGAATCAGAGCTGTTGGTGCTATCAAAGTTATGTAAACAGCCAATCGTTGTGTACATCCCAGAGCATGAGGCAGCATAG 558 0.4498 MAHKPFKFNEHILEQLRNGTAKFELVSSPAPSVAAPPNNITSLFGIGNRSALFFARIGSSSIGHSPAMKKLEHFSVQKVTGDGRCLFRALVKGMAYNKGTVLNQREERENADELRMAVKEAVCENEGERNLYEEALIAITVDEPLNRYCQRIVRPDFWGGESELLVLSKLCKQPIVVYIPEHEAA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium289g00004 185 Gene3D - 49 185 - -
Vium289g00004 185 SUPERFAMILY Cysteine proteinases 73 180 IPR038765 -
Vium289g00004 185 ProSiteProfiles OTU domain profile. 74 185 IPR003323 -
Vium289g00004 185 Pfam OTU-like cysteine protease 80 178 IPR003323 -
Vium289g00004 185 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 51 183 - -
Vium289g00004 185 FunFam Cysteine proteinases superfamily protein 53 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium289g00004 Vium-Chr289 38748 43980 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium289g00004 71 178 C2H2 Transcription Factor Family AT1G50670 31.193 3.17e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium289g00004 - - vun:114166084 350.132