Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium289g00003 ATGGCGCACAAGCCTTTCAAATTCAATGAGCATATTCTCGAGCAACTGAGAAATGGGACTGCGAAATTCGAGCTTGTTTCTTCCCCCGCTCCTTCAGTTGCTGCTCCTCCGAACAACATCACAAGCTTGTTTGGAATTGGGAATCGTAGCGCTCTCTTTTTCGCTAGAATTGGCTCTTCCTCTATTGGGCACTCTCCCGCAATGAAGAAACTTGAGCATTTTTCAGTTCAGAAGGTTACAGGGGATGGGCGATGTCTGTTTCGTGCACTGGTCAAAGGAATGGCTTACAACAAGGGAACAGTTCTTAATCAACGTGAGGAGAGAGAAAATGCAGATGAATTAAGAATGGCTGTGAAAGAAGCTGTATGTGAAAATGAGGGTGAACGTAATTTATATGAAGAAGCCCTCATTGCCATCACAGTTGATGAACCTCTAAATCGTTACTGCCAACGGATCGTACGACCTGATTTCTGGGGAGGAGAATCAGAGCTGTTGGTGCTATCAAAGTTATGTAAACAGCCAATCGTTGTGTACATCCCAGAGCATGAGCATAGAGGCGGTGGTTTTGGATCTGGCTTCATTCCCATTGCTGAGTATGGAAGTGAATTTAGAAAGGGTTCTAGGAGAAAAGCTGTGAGGCTATTGTACAGCGGCAAGAACCATTATGATCTTCTGGTATGA 681 0.4464 MAHKPFKFNEHILEQLRNGTAKFELVSSPAPSVAAPPNNITSLFGIGNRSALFFARIGSSSIGHSPAMKKLEHFSVQKVTGDGRCLFRALVKGMAYNKGTVLNQREERENADELRMAVKEAVCENEGERNLYEEALIAITVDEPLNRYCQRIVRPDFWGGESELLVLSKLCKQPIVVYIPEHEHRGGGFGSGFIPIAEYGSEFRKGSRRKAVRLLYSGKNHYDLLV 226
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium289g00003 226 ProSiteProfiles OTU domain profile. 74 226 IPR003323 -
Vium289g00003 226 Pfam OTU-like cysteine protease 80 221 IPR003323 -
Vium289g00003 226 Gene3D - 49 226 - -
Vium289g00003 226 CDD OTU_plant_OTU3-like 72 226 - -
Vium289g00003 226 SUPERFAMILY Cysteine proteinases 73 226 IPR038765 -
Vium289g00003 226 FunFam Cysteine proteinases superfamily protein 53 226 - -
Vium289g00003 226 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 59 226 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium289g00003 Vium-Chr289 38748 44278 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium289g00003 71 178 C2H2 Transcription Factor Family AT1G50670 31.193 5.81e-06 43.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium289g00003 - - gmx:100807522 414.075