Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium289g00001 ATGATTGTTGCAATGGACTTGAATGCCTCGCCGGTTCCAGAGGAAGATGAAGATATTTTTGAAGAGAAGATACACGTTGAAGAGTTTCATGCACCCGAAGAGCGTGCAGAAAGTGGAGTCGATATAGCACGCCGGGAGCGTGAAGAAAGAAAGAGACGGTTGAAGAGAGAACGACCAGATGACAGACCTGTACAGGTGTCACAGTCACCAGGATATGATCAGCTATTTCCCTCTAAGAACCTTAAATCGTATGATAAAAGCAAGCTTCCTCCAGGGTGGTTGGATTGTCCTTCATTTGGCCAGGAAATTTATGGCATGATACCTTCCAAGGTTCCACTTGGTGAATCTTTCCGTGATTGCATTCTTCCTGGTAAAAGATATTCATTTAAGCAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGCCTGGTGATTGATTTGACAAATACCTCTCGATACTATCCTGTGTCTGATTTAAAAAAAGAGGGCATCAAGCATGTTAAGATTCAATGCAAGGGGCGTGATTCTGTACCTGATAATTTAGCTGTGAACCAGTTCGTCTATGAGGTTACACAATTTATGTTACGTCAAAAACAAAAGACCTATATACTTGTTCATTGTACACATGGGCATAATCGTACAGGGTACATGATCATTCACTATCTAATGCGTGCCATGTCTATGTCTGTTACTCAGGCAATAAAAACATTTTCTGAAGCTCGTCCTCCTGGAATCTACAAGCCTGATTATATTGATGCATTGTACACATTTTATCATGAGAAAAAGCCTGAAATGGTAGTTTGTCCTCCCACTCCTGAGTGGAAGAGGTCTTCAGAATTTGATCTCAATGGTGAAGCTGTTCCAGATGATGATGATGACGGAGTACCAGGTCCTGATTTGCAGGAGAACCATGAGACAGACACACGAATGACAAATGATGATGTTTTAGGAGACGAGATTCCTTCTGATCAGCAAGATGCACTGCGTCAATTCTGTTATCAAACGCTTAAATTGGCTGTTGGGGCTAGGGGACACACACAGTTTCCAGGATCACACCCAGTTTCTCTCAACAGGGATAATTTACAATTGTTACGACAACGCTACTATTATGCAACATGGAAAGCAGATGGTACAAGATACATGATGCTAATAACAATGGATGGATGCTACTTAATTGATAGAAGTTTTAATTTTCGAAGGGTTCAAATGAGGTTCCCTTGCAGAAGTACAAATGATGGTTTGGGCGAGAAAACCCACCACTACACATTACTTGATGGTGAGATGGTTATTGATACATTGCCAGATTCACAGAAGCAGGAGAGAAGATATCTTATCTATGATATGATGGCAATCAACCAAGTGTCGATAATAGAGCGACCATTCTATGAAAGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATCATGAACGGCACCATATATATCAGAGCAGAAATCCTTACTATAGATATGATCTGGAACCATTCAGGGTGAGGAGGAAAGATTTCTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAGGAATTCATCAAAAGACTCTCACATGAAGCAGATGGTCTCATATTTCAGGGTTGGGATGATCCTTATATACCACGTACTCATGAAGGACTATTGAAGTGGAAATATGCTTATCTGAATTCAGTTGACTTTCTTTTTGAGGTTGATGGTGATCGTGAGATGCTTTTTCTCTACGAACGGGGAAAGAAGAAACTCTTGGAAGGGAACAGGGTTGAGTTCACAGATGGCACAGATCCCTCAGTTTATTCTGGAAAGATCATAGAATGTTGTTGGGATTTTGATAAACTGGAATGGAAGTATATGCGTATCAGAACAGATAAATCAACTCCAAATGAGTTCAATACTTACAGGAAGGTGATGCGAAGCATAAGAGACAACATTACTGAGGAAGATTTGTTGAATGAAATAAGTGAGATTATCCGCCTTCCGATGTATGCTGACAGGATAAGAAATGACAGTAAAGCAAATCAACACGCTAATGTGGCAAGGCGAAGGTGA 2049 0.4061 MIVAMDLNASPVPEEDEDIFEEKIHVEEFHAPEERAESGVDIARREREERKRRLKRERPDDRPVQVSQSPGYDQLFPSKNLKSYDKSKLPPGWLDCPSFGQEIYGMIPSKVPLGESFRDCILPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCKGRDSVPDNLAVNQFVYEVTQFMLRQKQKTYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKTFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGVPGPDLQENHETDTRMTNDDVLGDEIPSDQQDALRQFCYQTLKLAVGARGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRSTNDGLGEKTHHYTLLDGEMVIDTLPDSQKQERRYLIYDMMAINQVSIIERPFYERWKMLEKEVIEPRNHERHHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYIPRTHEGLLKWKYAYLNSVDFLFEVDGDREMLFLYERGKKKLLEGNRVEFTDGTDPSVYSGKIIECCWDFDKLEWKYMRIRTDKSTPNEFNTYRKVMRSIRDNITEEDLLNEISEIIRLPMYADRIRNDSKANQHANVARRR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium289g00001 682 CDD Adenylation_mRNA_capping 325 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vium289g00001 682 Gene3D - 587 659 IPR012340 -
Vium289g00001 682 Gene3D Protein tyrosine phosphatase superfamily 85 296 IPR029021 -
Vium289g00001 682 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 315 553 - -
Vium289g00001 682 Pfam mRNA capping enzyme, catalytic domain 354 552 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vium289g00001 682 ProSiteProfiles Dual specificity protein phosphatase domain profile. 111 266 IPR020422 GO:0006470|GO:0008138
Vium289g00001 682 SMART dsp_5 117 262 IPR020422 GO:0006470|GO:0008138
Vium289g00001 682 MobiDBLite consensus disorder prediction 25 63 - -
Vium289g00001 682 ProSiteProfiles ATP-dependent DNA ligase family profile. 436 580 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium289g00001 682 MobiDBLite consensus disorder prediction 299 314 - -
Vium289g00001 682 Gene3D DNA ligase/mRNA capping enzyme 313 552 - -
Vium289g00001 682 FunFam mRNA capping enzyme family protein 85 298 - -
Vium289g00001 682 CDD RNA_5'-triphosphatase 92 257 - -
Vium289g00001 682 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 277 IPR029021 -
Vium289g00001 682 MobiDBLite consensus disorder prediction 284 314 - -
Vium289g00001 682 FunFam mRNA-capping enzyme 574 667 - -
Vium289g00001 682 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 186 254 IPR000387 GO:0016311|GO:0016791
Vium289g00001 682 Pfam mRNA capping enzyme, C-terminal domain 557 650 IPR013846 -
Vium289g00001 682 SUPERFAMILY Nucleic acid-binding proteins 556 667 IPR012340 -
Vium289g00001 682 Pfam Dual specificity phosphatase, catalytic domain 141 260 IPR000340 GO:0008138|GO:0016311
Vium289g00001 682 FunFam mRNA capping enzyme, putative 313 550 - -
Vium289g00001 682 PANTHER MRNA-CAPPING ENZYME 84 664 - -
Vium289g00001 682 PIRSF mRNA_capping_HCE 76 682 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vium289g00001 682 MobiDBLite consensus disorder prediction 25 79 - -
Vium289g00001 682 ProSitePatterns Tyrosine specific protein phosphatases active site. 207 217 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium289g00001 Vium-Chr289 5257 30852 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium289g00001 1 682 Protein tyrosine phosphatase (PTP) family AT3G09100 68.215 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium289g00001 K13917 - gmx:100776633 1298.88