Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2897g00004 ATGTCTGAAACAGCTTCCACGACCAAGCCAATGGAAGATGTTCCTTCACTGATTTACAAAAACCCCATTAGGAGAAACTCTAGGCGATCTACAATGTATCTGGGCGTGAGAAGAAGGCCATGGGGAAGATATGCTGCTGAGATTAGGAACCCTTACACCAAAGAGAGACACTGGCTAGGCACATTTGACACTGCTGAAGAGGCTGCTATTGCCTATGATCTTTCATCTATCAACATTTCTGGTATCAATGCTCGAACCAATTTTCATTACCCTTTTCTGTCTCTTCCGCCACCTCCTATCTCATTGCCTCCTCCGCCGCCGCCACCTACCCCGGAGCTGCATCAAAGTGTTGGAGTTTGTCCGGAGATGAACTCTGCTTTCGATGGCGATGATGAATCTCTGGTTATTGCTTCCATTTTGCAAAGCTTTTCTAACTCTGGTAACTGTTCTTTTTAG 456 0.4583 MSETASTTKPMEDVPSLIYKNPIRRNSRRSTMYLGVRRRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAIAYDLSSINISGINARTNFHYPFLSLPPPPISLPPPPPPPTPELHQSVGVCPEMNSAFDGDDESLVIASILQSFSNSGNCSF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2897g00004 151 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Vium2897g00004 151 CDD AP2 33 88 IPR001471 GO:0003700|GO:0006355
Vium2897g00004 151 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Vium2897g00004 151 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Vium2897g00004 151 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Vium2897g00004 151 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Vium2897g00004 151 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Vium2897g00004 151 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Vium2897g00004 151 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 28 111 - -
Vium2897g00004 151 Pfam AP2 domain 34 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2897g00004 Vium-Chr2897 31044 31617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2897g00004 33 90 AP2-EREBP Transcription Factor Family AT1G12890 81.034 9.05e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2897g00004 AP2 2.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2897g00004 - - var:108324731 275.018