Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2897g00001 ATGGGCTTACCTTCCTCATCATCAGACACTAGCTGGTGGGTGTTTACACTTCCAGCCATAGCAGGAACACAAAACTTAACTCACAACCCACTCTTGCTCATAATCCTCACTGCAATTCTTTCCATTGCCCTTCTGGCGTGGGCCTTCCCAAGAGGGGGAGGAGGTCTTGCATGGAGAAACGGAAAGAACCAAATGGGCCGGGTTCCTGTACCCGGGCCCAAAGGAGTCCCTTTCTTCGGCCTCTTGTTTAGCTTAAACCATGCCCTACCTCATCGCACCCTCGCTTCCATTGCTTCAGCCCTATCCGCCACGAAACTCATGGCCTTCAGTTTGGGGTCAAGCCCAGTAGTTGTAACTTCCGACCCTCACGTGGCGCGTGAAATCTTGAACTCGCACCATTTCGCTGACCGTCCCGTTAAACAATCCGCTAAGAGCCTCATGTTCAACCGTGCCATTGGGTTTGCCCCAAACGGTGCGTATTGGCGCTTGCTGCGGAGGGTAGCCTCAACACACCTCTTCTCCCCGCGCCGCATTCTTGCCCACGAGCCAGGTCGCTTGCTAGACTGCGCTGCCATGTTACGGGCTATAGCTCAGGAGCAGTCCAAAAACGGGTTCGTGTGCCTAAGAAAACACCTCCAAGATGCAGCGCTGAATAACGTTATGGGAACTGTCTTTGGAAGAAGGTACCACGACCAAGATGAGTGTTATAATCGGCGTGAGATTGAAGAGGTGCGCGACATTGTGCGGGAAGGTTTTGAACTTTTGGGAGCTTTCAACTGGTCTGATTACGTTCCTTGGATACGCTTCTTTTATGACCCTTTACGTGTTCGAGAACGGTGCTCCGTTCTTGCTCCGAGAGTGAAGAAATTTGTAAAGAGGATTCTGGAGGAGCACCGAATATTGGCTCCATTCAAGGAACTTTCTGATGACTCGGACTTCGTGGACGTGCTGCTCTCTCTAGAAGAACATGACAAGCTCGAAGATGATGACATCATTGCTGTTTTATGGGAGATGATATTTCGTGGCACGGATACAACAGCACTTCTTACTGAGTGGGTCATGGCCGAGCTTATTTTGAATAAGCAAGTGCAAACTAGGCTTCGCAATGAACTCCGCAGGGTTGTGGGAAAGAAGATGGTAGTTACAGATGCTGATGTGATAAAATTGCCATACTTAGAAGCCATATTGAAAGAAACCCTGCGGTTGCATCCAATTGGGCCTCTTCTTTCGTGGGCCCGATTGTCCACGTCAGATGTCCATCTGAGCAATGGAATGGTGGTGCCAGCCAACACCACAGCAATGGTGAACATGTGGGCCATCACTCATGACCCTAGCGTGTGGCACGAGCCACTAGTGTTCAAACCAGAGAGGTTTGTGAAGAGTGAAGGAGGGGTCGAAGTGGATATCAGAGGTGGTGACCTTAGACTCGCACCATTTGGAGCTGGACGAAGGGTTTGCCCCGGTAAAAACCTAGGTCTTGTGACTGTGAGCCTTTGGGTGGCTAACTTGGTTCATCGTTTTCATTGGTTTCAAGACATGGCTAACCCAGTTGACCTAGCCGAGGTTCTGAAACTATCTTGTGAGATGAAGAACCCCCTCAGAGCCCTGGCATCTCCAAGGTTTACTAATTAA 1632 0.5018 MGLPSSSSDTSWWVFTLPAIAGTQNLTHNPLLLIILTAILSIALLAWAFPRGGGGLAWRNGKNQMGRVPVPGPKGVPFFGLLFSLNHALPHRTLASIASALSATKLMAFSLGSSPVVVTSDPHVAREILNSHHFADRPVKQSAKSLMFNRAIGFAPNGAYWRLLRRVASTHLFSPRRILAHEPGRLLDCAAMLRAIAQEQSKNGFVCLRKHLQDAALNNVMGTVFGRRYHDQDECYNRREIEEVRDIVREGFELLGAFNWSDYVPWIRFFYDPLRVRERCSVLAPRVKKFVKRILEEHRILAPFKELSDDSDFVDVLLSLEEHDKLEDDDIIAVLWEMIFRGTDTTALLTEWVMAELILNKQVQTRLRNELRRVVGKKMVVTDADVIKLPYLEAILKETLRLHPIGPLLSWARLSTSDVHLSNGMVVPANTTAMVNMWAITHDPSVWHEPLVFKPERFVKSEGGVEVDIRGGDLRLAPFGAGRRVCPGKNLGLVTVSLWVANLVHRFHWFQDMANPVDLAEVLKLSCEMKNPLRALASPRFTN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2897g00001 543 PRINTS P450 superfamily signature 486 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 PRINTS P450 superfamily signature 341 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 PRINTS P450 superfamily signature 477 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 PRINTS P450 superfamily signature 394 405 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 FunFam Cytochrome P450 78A5 62 540 - -
Vium2897g00001 543 SUPERFAMILY Cytochrome P450 71 540 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 PANTHER CYTOCHROME P450 78A7-RELATED 8 540 - -
Vium2897g00001 543 Gene3D Cytochrome P450 62 538 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 479 488 IPR017972 GO:0005506|GO:0016705
Vium2897g00001 543 PRINTS E-class P450 group I signature 330 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 PRINTS E-class P450 group I signature 393 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 PRINTS E-class P450 group I signature 486 509 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 PRINTS E-class P450 group I signature 215 233 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 PRINTS E-class P450 group I signature 476 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 PRINTS E-class P450 group I signature 436 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 PRINTS E-class P450 group I signature 350 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 PRINTS E-class P450 group I signature 100 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 Pfam Cytochrome P450 71 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2897g00001 543 CDD CYP78 102 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2897g00001 Vium-Chr2897 2654 5096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2897g00001 6 541 Cytochrome P450 AT5G09970 63.569 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2897g00001 K20619 - qsa:O6P43_008036 753.436