Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00054 ATGGAGTCAGATCTTCAGCAGCACCCTCCCATGTTTTTGGATCACCAGCAGCCGACGAATTCAGGGTTGACACGGTATCGATCGGCTCCGAGTTCTTATTTTTCGAGCATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAACGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGCGATGCTGATGCTGATGCTGCTGATGCTGCTGATGCAGAGGATGCGCTTCCTACTCAAAATCCCTCTACCGTTGTTGCTGTTAAAGAAGAGGTTAATCAACAGCCTAAGGATATGCCTTTACCACCCATCAATAATGAGCCTCTTGTTCTCCAACAACATCAACAGCAGCAACAAAGTAATATCAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAGAACATTGGACGACCACCTTTGCCAAACCAGATTGAGACCGGTCGTAGAAGTGCTTCAAATCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACTTTAACATTGAAAGTGGTTATGCTGCTGTAAGAGGCATGGGGACTATGGGAGCTGCTAATAACAGTACTGAGGAAGCAAACTTTTCTCCCGTAACAAGGATGAAGAATGCACCAAACTACTCTTCGGGATTAATGTCGTCAAGGGCTGAAATTGGAAACAAAAACAATACACAGAATAATGCAGAAAATGAAGGGTTTGCTGACAGCCAGGGCAATGAATTCATCCCTGGTTTCCCCGTTGGTTCATGGGATGATTCTGCAATCATGTCTGACAATATGACAGGTCTGAAGAGACACAGAGAAGAAGATGTAAAACCATTTTCTGGTTTAAACCTACCGGAAAGTCAGAACGATGCAGGAGGCCAACCTTCCACTGCTTTGGCTCATCAATTGAGTTTGCCAAATACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTACAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCAAAACGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACGGCAGACATGTTGGACTTGGCTATCGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGACTCTTTCAGAAAATCGCGATAAGTGTACGTGTTCACACAATCAGCAGCATCAGCAGCAGCAGCAATAA 1254 0.4434 MESDLQQHPPMFLDHQQPTNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDADADAADAADAEDALPTQNPSTVVAVKEEVNQQPKDMPLPPINNEPLVLQQHQQQQQSNINNYGSSAPQNFYQNIGRPPLPNQIETGRRSASNLIRHGSSPAGLFSNFNIESGYAAVRGMGTMGAANNSTEEANFSPVTRMKNAPNYSSGLMSSRAEIGNKNNTQNNAENEGFADSQGNEFIPGFPVGSWDDSAIMSDNMTGLKRHREEDVKPFSGLNLPESQNDAGGQPSTALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVETLSENRDKCTCSHNQQHQQQQQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00054 417 Coils Coil 380 407 - -
Vium2895g00054 417 Gene3D - 341 416 IPR036638 GO:0046983
Vium2895g00054 417 Pfam Helix-loop-helix DNA-binding domain 345 391 IPR011598 GO:0046983
Vium2895g00054 417 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 414 - -
Vium2895g00054 417 MobiDBLite consensus disorder prediction 10 27 - -
Vium2895g00054 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 390 IPR011598 GO:0046983
Vium2895g00054 417 FunFam Transcription factor bHLH130 family 341 410 - -
Vium2895g00054 417 MobiDBLite consensus disorder prediction 1 27 - -
Vium2895g00054 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 405 IPR036638 GO:0046983
Vium2895g00054 417 SMART finulus 346 396 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00054 Vium-Chr2895 348354 352373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00054 1 407 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.667 1.47e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2895g00054 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00054 - - gmx:100803833 637.491