Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00053 ATGATTAACAATGGAGTCTGCACTCTCCGCACTTGCTTCCGTTTTCCGGGGAGGTCGCTATTCCCACCATTGCAGCGCTCGTTCACTTTCCGGCGGCGGTTTCTGGTGACTGCATCCCAAAGGAAGAAGAAAGAGAAGGTTATTGTCATTTCTGGACCCACCGGTTCGGGCAAGAGCCGCCTCGCATTGGAACTCGCTAAGAGCCTCAACGGCGAAATCGTCAGTGCAGACTCTGTCCAGGTATATCGGGGGCTTGATGTTGGATCTGCAAAGCCTTCCCCAGATGAAAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCACCCATCTGAAGACTATTCTGCTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAATCTTTTTCAGTGATTACATCTGAAGTAAATCAAGAATTAGCTGAACTACAGAGGAATGAAGACTGGGATACAGCTGTACAGTTGGTGGTAAAAGCAGGAGACCCAAAGGCTCAATTTCTAGCAGTGAATGATTGGTATCGACTACGGCGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCATTTCGGGTACCATATGATTCTTTCAGGGAACAGGGTGAATGTAGTGTTGCTGATGATTCTGAGATATCTGATATGAACACGTACGGTGATGGAATGGAAGAAACCAGCTCATCAGAGTTAGACTATGAGTTTATGTGCTTTTTCCTTTCTAGTCATAGACTTAACCTCTATAGATCAATTGATTATCGGTGTGAAGATATGCTTTTAGGAAGGGATGGGATTTTGTCTGAGGCTCAGTGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGGGGTCAGAGTTCTGCTGCAGAGTTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCACGGTAA 1071 0.4454 MINNGVCTLRTCFRFPGRSLFPPLQRSFTFRRRFLVTASQRKKKEKVIVISGPTGSGKSRLALELAKSLNGEIVSADSVQVYRGLDVGSAKPSPDERKEVPHHLVDILHPSEDYSAGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKSFSVITSEVNQELAELQRNEDWDTAVQLVVKAGDPKAQFLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGECSVADDSEISDMNTYGDGMEETSSSELDYEFMCFFLSSHRLNLYRSIDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLQRCREQGGQSSAAEFYKFLFEFQKASR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00053 356 Gene3D - 44 356 IPR027417 -
Vium2895g00053 356 Gene3D - 159 226 - -
Vium2895g00053 356 Pfam IPP transferase 80 331 - -
Vium2895g00053 356 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Vium2895g00053 356 Hamap tRNA dimethylallyltransferase [miaA]. 47 356 IPR018022 GO:0008033
Vium2895g00053 356 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 336 IPR039657 -
Vium2895g00053 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 175 IPR027417 -
Vium2895g00053 356 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00053 Vium-Chr2895 333923 337584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00053 50 224 C2H2 Transcription Factor Family AT2G27760 29.508 2.77e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00053 K00791 - gmx:100808814 640.188