Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2895g00052 ATGATTAACAATGGAGTCTGCACTCTCCGCACTTGCTTCCGTTTTCCGGGGAGGTCGCTATTCCCACCATTGCAGCGCTCGTTCACTTTCCGGCGGCGGTTTCTGGTGACTGCATCCCAAAGGAAGAAGAAAGAGAAGGTTATTGTCATTTCTGGACCCACCGGTTCGGGCAAGAGCCGCCTCGCATTGGAACTCGCTAAGAGCCTCAACGGCGAAATCGTCAGTGCAGACTCTGTCCAGGTATATCGGGGGCTTGATGTTGGATCTGCAAAGCCTTCCCCAGATGAAAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCACCCATCTGAAGACTATTCTGCTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAATCTTTTTCAGTGATTACATCTGAAGTAAATCAAGAATTAGCTGAACTACAGAGGAATGAAGACTGGGATACAGCTGTACAGTTGGTGGTAAAAGCAGGAGACCCAAAGGCTCAATTTCTAGCAGTGAATGATTGGTATCGACTACGGCGTAGCCTAGAGATTATTAAGGAAGGGATGGGATTTTGTCTGAGGCTCAGTGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGGGGTCAGAGTTCTGCTGCAGAGTTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCACGGTAATGCATTTTGTTGTTTTATAAGATAA 864 0.4525 MINNGVCTLRTCFRFPGRSLFPPLQRSFTFRRRFLVTASQRKKKEKVIVISGPTGSGKSRLALELAKSLNGEIVSADSVQVYRGLDVGSAKPSPDERKEVPHHLVDILHPSEDYSAGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKSFSVITSEVNQELAELQRNEDWDTAVQLVVKAGDPKAQFLAVNDWYRLRRSLEIIKEGMGFCLRLSGFLIRVFIQTPILQLKQLVTDKPWSTYKDAESKGVRVLLQSFTNSCLNFKKHHGNAFCCFIR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2895g00052 287 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 161 IPR039657 -
Vium2895g00052 287 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 213 IPR018022 GO:0008033
Vium2895g00052 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 175 IPR027417 -
Vium2895g00052 287 Gene3D - 43 219 IPR027417 -
Vium2895g00052 287 FunFam tRNA dimethylallyltransferase 9 155 219 - -
Vium2895g00052 287 Pfam IPP transferase 80 216 - -
Vium2895g00052 287 Hamap tRNA dimethylallyltransferase [miaA]. 47 287 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2895g00052 Vium-Chr2895 333919 337584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2895g00052 50 172 C2H2 Transcription Factor Family AT2G27760 34.884 7.85e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2895g00052 K00791 - gmx:100808814 376.711